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30 lines
1.0 KiB
XML
30 lines
1.0 KiB
XML
<tool id="interactive_tool_cellxgene" tool_type="interactive" name="Interactive CellXgene Environment" version="0.16.2">
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<requirements>
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<container type="docker">quay.io/biocontainers/cellxgene:0.16.2--py_0</container>
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</requirements>
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<entry_points>
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<entry_point name="Cellxgene Single Cell Visualisation on $infile.display_name" requires_domain="True">
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<port>80</port>
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</entry_point>
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</entry_points>
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<command><![CDATA[
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#import re
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#set $fancy_name = '/tmp/galaxy_cellxgene_' + re.sub('[^\w\-_]', '_', $infile.element_identifier) + '.h5ad'
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cp '${infile}' '${fancy_name}'
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&&
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cellxgene launch --host 0.0.0.0 --port 80 '${fancy_name}'
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]]>
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</command>
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<inputs>
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<param name="infile" type="data" format="h5ad" label="Concatenate Dataset"/>
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</inputs>
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<outputs>
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<data name="out_file1" format="txt" />
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</outputs>
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<tests>
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</tests>
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<help>
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Interactive tool for visualising AnnData.
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</help>
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</tool>
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