Jeremy Goecks 6f2c3d6761 Have Bowtie2 wrapper produce BAM rather than SAM output.

2012-06-11 15:52:36 -04:00

..

bfast_wrapper.py

Sam header suppression made optional in BFAST and default set to off for BFAST and Bowtie. Fixed dbkey setting on outputs for for BFAST, Bowtie, Mosaik. Fixed sorting of built-in builds for these tools so ordered by pretty name.

2011-05-09 12:11:54 -04:00

bfast_wrapper.xml

Sam header suppression made optional in BFAST and default set to off for BFAST and Bowtie. Fixed dbkey setting on outputs for for BFAST, Bowtie, Mosaik. Fixed sorting of built-in builds for these tools so ordered by pretty name.

2011-05-09 12:11:54 -04:00

bowtie2_wrapper.py

Have Bowtie2 wrapper produce BAM rather than SAM output.

2012-06-11 15:52:36 -04:00

bowtie2_wrapper.xml

Have Bowtie2 wrapper produce BAM rather than SAM output.

2012-06-11 15:52:36 -04:00

bowtie_color_wrapper.xml

Replace old filter() on tool_data_tables by param value hack with param.fields.path for several tools.

2011-11-29 17:30:14 -05:00

bowtie_wrapper.py

Sam header suppression made optional in BFAST and default set to off for BFAST and Bowtie. Fixed dbkey setting on outputs for for BFAST, Bowtie, Mosaik. Fixed sorting of built-in builds for these tools so ordered by pretty name.

2011-05-09 12:11:54 -04:00

bowtie_wrapper.xml

Replace old filter() on tool_data_tables by param value hack with param.fields.path for several tools.

2011-11-29 17:30:14 -05:00

bwa_color_wrapper.xml

Fix for BWA -R option.

2012-04-10 09:24:25 -04:00

bwa_wrapper.py

Fix for BWA -R option.

2012-04-10 09:24:25 -04:00

bwa_wrapper.xml

Fix for BWA -R option.

2012-04-10 09:24:25 -04:00

fastq_statistics.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

lastz_paired_reads_wrapper.py

Added version info to stdout for NGS tools

2010-11-24 12:35:49 -05:00

lastz_paired_reads_wrapper.xml

Replace old filter() on tool_data_tables by param value hack with param.fields.path for several tools.

2011-11-29 17:30:14 -05:00

lastz_wrapper.py

Added version info to stdout for NGS tools

2010-11-24 12:35:49 -05:00

lastz_wrapper.xml

Replace old filter() on tool_data_tables by param value hack with param.fields.path for several tools.

2011-11-29 17:30:14 -05:00

mosaik.xml

Replace old filter() on tool_data_tables by param value hack with param.fields.path for several tools.

2011-11-29 17:30:14 -05:00

PerM.xml

Minor fix for 04e8ed0cd930.

2011-11-29 17:35:14 -05:00

srma_wrapper.py

Update SRMA wrapper to use data tables.

2011-10-31 09:49:51 -04:00

srma_wrapper.xml

Update SRMA wrapper to use data tables.

2011-10-31 09:49:51 -04:00