mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
John Chilton
db68ac271d
That was a lazy shortcut on my part and should have never happened. This resolves that and also another task on my todo list of making an easily pip installable, lightweight way of getting access to the tours validation script at the same time by restructuring packages and cleaning up the dependency structure. The navigation piece of galaxy-selenium has been split out of into its own package and tours now depend on that directly. In order to have that lightweight access to the tour validation code - tours have also been split out of app. This will also encourage that package to continue to be decoupled nicely from the larger galaxy-app package.
67 lines
1.7 KiB
Bash
Executable File
67 lines
1.7 KiB
Bash
Executable File
#!/bin/bash
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set -ex
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# Don't display the pip progress bar when running under CI
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[ "$CI" = 'true' ] && export PIP_PROGRESS_BAR=off
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# Change to packages directory.
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cd "$(dirname "$0")"
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# Use a throw-away virtualenv
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TEST_PYTHON=${TEST_PYTHON:-"python"}
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TEST_ENV_DIR=${TEST_ENV_DIR:-$(mktemp -d -t gxpkgtestenvXXXXXX)}
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virtualenv -p "$TEST_PYTHON" "$TEST_ENV_DIR"
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. "${TEST_ENV_DIR}/bin/activate"
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pip install --upgrade pip setuptools wheel
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pip install -r../lib/galaxy/dependencies/pinned-lint-requirements.txt
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# ensure ordered by dependency DAG
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# TODO: add selenium in once type issues are cleared up
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PACKAGE_DIRS=(
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util
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objectstore
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job_metrics
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config
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files
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tool_util
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data
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job_execution
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auth
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web_stack
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web_framework
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navigation
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tours
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app
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webapps
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test_base
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test_driver
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test_api
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)
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for ((i=0; i<${#PACKAGE_DIRS[@]}; i++)); do
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printf "\n========= TESTING PACKAGE ${PACKAGE_DIRS[$i]} =========\n\n"
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package_dir=${PACKAGE_DIRS[$i]}
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cd "$package_dir"
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# Install extras (if needed)
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if [ "$package_dir" = "util" ]; then
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pip install -e '.[template,jstree]'
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elif [ "$package_dir" = "tool_util" ]; then
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pip install -e '.[cwl,mulled,edam]'
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else
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pip install -e '.'
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fi
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pip install -r test-requirements.txt
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# Prevent execution of alembic/env.py at test collection stage (alembic.context not set)
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# Also ignore functional tests (galaxy_test/ and tool_shed/test/).
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unit_extra='--doctest-modules --ignore=galaxy/model/migrations/alembic/ --ignore=galaxy_test/ --ignore=tool_shed/test/'
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# Ignore exit code 5 (no tests ran)
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pytest $unit_extra . || test $? -eq 5
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make mypy
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cd ..
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done
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