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153 lines
8.0 KiB
Python
153 lines
8.0 KiB
Python
from base import api
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from base.populators import (
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DatasetCollectionPopulator,
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DatasetPopulator,
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LibraryPopulator,
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TestsDatasets,
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wait_on_state
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)
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class LibrariesApiTestCase( api.ApiTestCase, TestsDatasets ):
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def setUp( self ):
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super( LibrariesApiTestCase, self ).setUp()
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self.dataset_populator = DatasetPopulator( self.galaxy_interactor )
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self.dataset_collection_populator = DatasetCollectionPopulator( self.galaxy_interactor )
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self.library_populator = LibraryPopulator( self )
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def test_create( self ):
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data = dict( name="CreateTestLibrary" )
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create_response = self._post( "libraries", data=data, admin=True )
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self._assert_status_code_is( create_response, 200 )
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library = create_response.json()
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self._assert_has_keys( library, "name" )
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assert library[ "name" ] == "CreateTestLibrary"
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def test_delete( self ):
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library = self.library_populator.new_library( "DeleteTestLibrary" )
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create_response = self._delete( "libraries/%s" % library[ "id" ], admin=True )
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self._assert_status_code_is( create_response, 200 )
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library = create_response.json()
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self._assert_has_keys( library, "deleted" )
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assert library[ "deleted" ] is True
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# Test undeleting
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data = dict( undelete='true' )
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create_response = self._delete( "libraries/%s" % library[ "id" ], data=data, admin=True )
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library = create_response.json()
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self._assert_status_code_is( create_response, 200 )
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assert library[ "deleted" ] is False
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def test_nonadmin( self ):
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# Anons can't create libs
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data = dict( name="CreateTestLibrary" )
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create_response = self._post( "libraries", data=data, admin=False, anon=True )
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self._assert_status_code_is( create_response, 403 )
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# Anons can't delete libs
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library = self.library_populator.new_library( "AnonDeleteTestLibrary" )
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create_response = self._delete( "libraries/%s" % library[ "id" ], admin=False, anon=True )
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self._assert_status_code_is( create_response, 403 )
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# Anons can't update libs
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data = dict( name="ChangedName", description="ChangedDescription", synopsis='ChangedSynopsis' )
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create_response = self._patch( "libraries/%s" % library[ "id" ], data=data, admin=False, anon=True )
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self._assert_status_code_is( create_response, 403 )
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def test_update( self ):
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library = self.library_populator.new_library( "UpdateTestLibrary" )
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data = dict( name='ChangedName', description='ChangedDescription', synopsis='ChangedSynopsis' )
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create_response = self._patch( "libraries/%s" % library[ "id" ], data=data, admin=True )
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self._assert_status_code_is( create_response, 200 )
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library = create_response.json()
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self._assert_has_keys( library, 'name', 'description', 'synopsis' )
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assert library['name'] == 'ChangedName'
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assert library['description'] == 'ChangedDescription'
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assert library['synopsis'] == 'ChangedSynopsis'
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def test_create_private_library_permissions( self ):
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library = self.library_populator.new_library( "PermissionTestLibrary" )
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library_id = library[ "id" ]
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role_id = self.library_populator.user_private_role_id()
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self.library_populator.set_permissions( library_id, role_id )
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create_response = self._create_folder( library )
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self._assert_status_code_is( create_response, 200 )
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def test_create_dataset_denied( self ):
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library = self.library_populator.new_private_library( "ForCreateDatasets" )
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folder_response = self._create_folder( library )
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self._assert_status_code_is( folder_response, 200)
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folder_id = folder_response.json()[0]['id']
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history_id = self.dataset_populator.new_history()
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hda_id = self.dataset_populator.new_dataset( history_id, content="1 2 3" )['id']
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with self._different_user():
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payload = {'from_hda_id': hda_id}
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create_response = self._post( "folders/%s/contents" % folder_id, payload )
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self._assert_status_code_is( create_response, 403 )
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def test_create_dataset( self ):
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library = self.library_populator.new_private_library( "ForCreateDatasets" )
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payload, files = self.library_populator.create_dataset_request( library, file_type="txt", contents="create_test" )
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create_response = self._post( "libraries/%s/contents" % library[ "id" ], payload, files=files )
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self._assert_status_code_is( create_response, 200 )
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library_datasets = create_response.json()
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assert len( library_datasets ) == 1
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library_dataset = library_datasets[ 0 ]
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def show():
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return self._get( "libraries/%s/contents/%s" % ( library[ "id" ], library_dataset[ "id" ] ) )
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wait_on_state( show, assert_ok=True )
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library_dataset = show().json()
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self._assert_has_keys( library_dataset, "peek", "data_type" )
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assert library_dataset[ "peek" ].find("create_test") >= 0
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assert library_dataset[ "file_ext" ] == "txt", library_dataset[ "file_ext" ]
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def test_create_dataset_in_folder( self ):
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library = self.library_populator.new_private_library( "ForCreateDatasets" )
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folder_response = self._create_folder( library )
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self._assert_status_code_is( folder_response, 200)
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folder_id = folder_response.json()[0]['id']
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history_id = self.dataset_populator.new_history()
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hda_id = self.dataset_populator.new_dataset( history_id, content="1 2 3" )['id']
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payload = {'from_hda_id': hda_id}
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create_response = self._post( "folders/%s/contents" % folder_id, payload )
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self._assert_status_code_is( create_response, 200 )
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self._assert_has_keys( create_response.json(), "name", "id" )
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def test_create_datasets_in_library_from_collection( self ):
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library = self.library_populator.new_private_library( "ForCreateDatasetsFromCollection" )
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folder_response = self._create_folder( library )
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self._assert_status_code_is( folder_response, 200)
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folder_id = folder_response.json()[0]['id']
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history_id = self.dataset_populator.new_history()
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hdca_id = self.dataset_collection_populator.create_list_in_history( history_id, contents=["xxx", "yyy"] ).json()["id"]
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payload = {'from_hdca_id': hdca_id, 'create_type': 'file', 'folder_id': folder_id}
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create_response = self._post( "libraries/%s/contents" % library['id'], payload )
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self._assert_status_code_is(create_response, 200)
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def test_create_datasets_in_folder_from_collection( self ):
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library = self.library_populator.new_private_library( "ForCreateDatasetsFromCollection" )
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history_id = self.dataset_populator.new_history()
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hdca_id = self.dataset_collection_populator.create_list_in_history( history_id, contents=["xxx", "yyy"] ).json()["id"]
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folder_response = self._create_folder( library )
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self._assert_status_code_is( folder_response, 200)
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folder_id = folder_response.json()[0]['id']
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payload = {'from_hdca_id': hdca_id}
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create_response = self._post( "folders/%s/contents" % folder_id, payload )
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self._assert_status_code_is( create_response, 200 )
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assert len(create_response.json()) == 2
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# Also test that anything different from a flat dataset collection list
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# is refused
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hdca_pair_id = self.dataset_collection_populator.create_list_of_pairs_in_history( history_id).json()['id']
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payload = {'from_hdca_id': hdca_pair_id}
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create_response = self._post( "folders/%s/contents" % folder_id, payload )
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self._assert_status_code_is( create_response, 501 )
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assert create_response.json()['err_msg'] == 'Cannot add nested collections to library. Please flatten your collection first.'
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def _create_folder( self, library ):
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create_data = dict(
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folder_id=library[ "root_folder_id" ],
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create_type="folder",
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name="New Folder",
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)
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return self._post( "libraries/%s/contents" % library[ "id" ], data=create_data )
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