Nicola Soranzo 5e7f0c4b18 Fix unit tests exit status ...

Broken in https://github.com/galaxyproject/galaxy/pull/2564
Also update scripts/nosetests.py

2016-07-29 19:47:08 +01:00

..

api

Python3:script/api/

2016-06-25 20:49:06 -04:00

auth

Clean up pam auth helper.

2015-07-17 08:06:04 -04:00

cleanup_datasets

Python3: small fixes to previous commits

2016-06-26 02:43:57 -04:00

communication

Adding maximize/minimize feature to the communication channel

2016-07-14 14:11:44 +02:00

data_libraries

Python3: small fixes to previous commits

2016-06-26 02:43:57 -04:00

loc_files

Fix the remaining 1334 flake8 errors in scripts/ . Close #391.

2016-02-18 15:45:15 +00:00

metagenomics

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

microbes

Fix more E203 flake8 errors

2016-05-17 23:53:16 +01:00

migrate_tools

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

others

Python 3: use "as" instead of comma in except clause

2016-05-17 23:53:16 +01:00

taxonomy

…

tool_shed

Fix more E203 flake8 errors

2016-05-17 23:53:16 +01:00

tools

Python 3: use "as" instead of comma in except clause

2016-05-17 23:53:16 +01:00

__init__.py

…

binary_compatibility.py

Add the scientific platform (Scientific Linux) as binary compatible

2016-02-03 13:33:42 -05:00

bootstrap_history_announce_template.rst

Fixup end of release items for release notes.

2015-08-27 13:04:17 +01:00

bootstrap_history.py

Python3: small fixes to previous commits

2016-06-26 02:43:57 -04:00

build_toolbox.py

Python3: scripts/cleanup_datasets scripts/data_libraries

2016-06-25 21:49:25 -04:00

build_universe_config.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

check_eggs.py

Add stub fetch_eggs.py/check_eggs.py for people whose build/test/run

2015-11-06 11:06:11 -05:00

check_galaxy.py

Python3: scripts/cleanup_datasets scripts/data_libraries

2016-06-25 21:49:25 -04:00

check_python.py

Python3: scripts/cleanup_datasets scripts/data_libraries

2016-06-25 21:49:25 -04:00

common_startup.sh

When CONDA_ALREADY_INSTALLED is undefined there's an error due to the number of arguments in the boolean expression (we actually *do* always want a 1 or 0 there, never empty)

2016-07-08 10:52:08 -04:00

create_db.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

db_shell.py

Python3: small fixes to previous commits

2016-06-26 02:43:57 -04:00

drmaa_external_killer.py

Python 3: use "as" instead of comma in except clause

2016-05-17 23:53:16 +01:00

drmaa_external_runner.py

Python3: scripts/cleanup_datasets scripts/data_libraries

2016-06-25 21:49:25 -04:00

edam_mapping.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

external_chown_script.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

extract_dataset_part.py

Python 3: use "as" instead of comma in except clause

2016-05-17 23:53:16 +01:00

extract_toolbox_sections.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

fetch_eggs.py

Python3: scripts/cleanup_datasets scripts/data_libraries

2016-06-25 21:49:25 -04:00

functional_tests.py

Implement IntegrationTestCase and EmbeddedPulsarTestCase.

2016-04-04 20:08:55 -04:00

galaxy-main

Fix the remaining 1334 flake8 errors in scripts/ . Close #391.

2016-02-18 15:45:15 +00:00

get_platforms.py

Fix the remaining 1334 flake8 errors in scripts/ . Close #391.

2016-02-18 15:45:15 +00:00

grt.py

Refactor grt.py method names to be clear public interface is only main().

2016-07-21 14:59:29 -04:00

grt.yml.sample

grt.ini.sample is a YAML file, git it a YAML extension.

2016-07-21 14:31:25 -04:00

helper.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

manage_db.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

manage_tools.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

nosetests.py

Fix unit tests exit status

2016-07-29 19:47:08 +01:00

paster.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

patch.sh

Add the script I used to create security patches

2016-02-24 16:54:30 -05:00

rst2html.py

…

run_selenium_tests.sh

…

runtime_stats.py

Fix more E203 flake8 errors

2016-05-17 23:53:16 +01:00

set_dataset_sizes.py

Initialize objectstore for fix_set_dataset_sizes script (otherwise it doesn't currently run successfully)

2016-06-25 19:04:44 -04:00

set_user_disk_usage.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

summarize_timings.py

Improvements to workflow scaling performance testing scripts.

2016-03-21 01:39:45 +00:00

sync_reports_config.py

Changed reports_wsgi.ini to reports.ini

2015-11-27 23:50:46 +05:30

transfer.py

Python 3: use "as" instead of comma in except clause

2016-05-17 23:53:16 +01:00

update_shed_config_path.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00