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26 lines
1.0 KiB
XML
26 lines
1.0 KiB
XML
<tool id="metadata_bam" name="metadata BAM" version="1.0.0">
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<command>echo "${ref_names}" > "${output_of_input_metadata}"</command>
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<inputs>
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<param name="input_bam" type="data" format="bam" label="BAM File"/>
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<param name="ref_names" type="select" optional="False" label="Select references you would like to restrict bam to" multiple="True">
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<options>
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<filter type="data_meta" ref="input_bam" key="reference_names" />
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</options>
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</param>
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</inputs>
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<outputs>
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<data format="txt" name="output_of_input_metadata" />
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</outputs>
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<tests>
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<test>
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<param name="input_bam" value="3unsorted.bam" ftype="bam" />
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<!-- This output tests setting using bam reference name metadata above -->
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<param name="ref_names" value="chr10_random,chr11,chrM,chrX,chr16" />
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<output name="output_of_input_metadata" ftype="txt">
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<assert_contents>
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<has_line line="chr10_random,chr11,chrM,chrX,chr16" />
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</assert_contents>
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</output>
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</test>
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</tests></tool>
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