mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-10-24 02:04:04 +08:00
John Chilton
ac581a5453
- Allow running through ``run_tests.sh``. - Enable more verbose test errors for Conda tests. - Refactor how integration tests depend on API testing (use a Mixin instead of subclassing conceptually conflicting TestCase classes).
114 lines
4.7 KiB
Python
114 lines
4.7 KiB
Python
"""Integration tests for conda dependency resolution."""
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import os
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import shutil
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from tempfile import mkdtemp
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from base import integration_util
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GNUPLOT = {u'version': u'4.6', u'type': u'package', u'name': u'gnuplot'}
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class CondaResolutionIntegrationTestCase(integration_util.IntegrationTestCase):
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"""Test conda dependency resolution through API."""
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framework_tool_and_types = True
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@classmethod
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def handle_galaxy_config_kwds(cls, config):
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cls.conda_tmp_prefix = mkdtemp()
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config["use_cached_dep_manager"] = True
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config["conda_auto_init"] = True
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config["conda_prefix"] = os.path.join(cls.conda_tmp_prefix, 'conda')
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@classmethod
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def tearDownClass(cls):
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"""Shutdown Galaxy server and cleanup temp directory."""
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shutil.rmtree(cls.conda_tmp_prefix)
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cls._test_driver.tear_down()
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cls._app_available = False
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def test_dependency_before_install( self ):
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"""
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Test that dependency is not installed (response['dependency_type'] == 'null').
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"""
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data = GNUPLOT
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create_response = self._get( "dependency_resolvers/dependency", data=data, admin=True )
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self._assert_status_code_is( create_response, 200 )
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response = create_response.json()
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assert response['dependency_type'] is None and response['exact']
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def test_dependency_install( self ):
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"""
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Test installation of GNUPLOT dependency.
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"""
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data = GNUPLOT
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create_response = self._post( "dependency_resolvers/dependency", data=data, admin=True )
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self._assert_status_code_is( create_response, 200 )
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response = create_response.json()
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self._assert_dependency_type(response)
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def test_dependency_install_not_exact(self):
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"""
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Test installation of gnuplot with a version that does not exist.
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Sh
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"""
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data = GNUPLOT.copy()
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data['version'] = '4.9999'
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create_response = self._post("dependency_resolvers/dependency", data=data, admin=True)
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self._assert_status_code_is(create_response, 200)
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response = create_response.json()
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self._assert_dependency_type(response, exact=False)
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def test_dependency_status_installed_exact( self ):
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"""
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GET request to dependency_resolvers/dependency with GNUPLOT dependency.
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Should be installed through conda (response['dependency_type'] == 'conda').
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"""
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data = GNUPLOT
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create_response = self._get( "dependency_resolvers/dependency", data=data, admin=True )
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self._assert_status_code_is( create_response, 200 )
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response = create_response.json()
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self._assert_dependency_type(response)
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def test_dependency_status_installed_not_exact( self ):
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"""
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GET request to dependency_resolvers/dependency with GNUPLOT dependency.
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Should be installed through conda (response['dependency_type'] == 'conda'),
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but version 4.9999 does not exist.
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"""
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data = GNUPLOT.copy()
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data['version'] = '4.9999'
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create_response = self._get( "dependency_resolvers/dependency", data=data, admin=True )
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self._assert_status_code_is( create_response, 200 )
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response = create_response.json()
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self._assert_dependency_type(response, exact=False)
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def test_conda_install_through_tools_api( self ):
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tool_id = 'mulled_example_multi_1'
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endpoint = "tools/%s/install_dependencies" % tool_id
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data = {'id': tool_id}
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create_response = self._post(endpoint, data=data, admin=True)
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self._assert_status_code_is( create_response, 200 )
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response = create_response.json()
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assert any([True for d in response if d['dependency_type'] == 'conda'])
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endpoint = "tools/%s/build_dependency_cache" % tool_id
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create_response = self._post(endpoint, data=data, admin=True)
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self._assert_status_code_is( create_response, 200 )
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def test_conda_clean( self ):
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endpoint = 'dependency_resolvers/clean'
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create_response = self._post(endpoint, data={}, admin=True)
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self._assert_status_code_is(create_response, 200)
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response = create_response.json()
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assert response == "OK"
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def _assert_dependency_type(self, response, type='conda', exact=True):
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if 'dependency_type' not in response:
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raise Exception("Response [%s] did not contain key 'dependency_type'" % response)
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dependency_type = response['dependency_type']
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assert dependency_type == type, "Dependency type [%s] not the expected value [%s]" % (dependency_type, type)
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if 'exact' not in response:
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raise Exception("Response [%s] did not contain key 'exact'" % response)
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assert response['exact'] is exact
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