mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Nicola Soranzo
21b44bf348
using the following command: ``` autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 . ```
52 lines
2.2 KiB
Python
Executable File
52 lines
2.2 KiB
Python
Executable File
#!/usr/bin/env python
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from __future__ import print_function
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import os
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import sys
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from common import get, submit
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def create_sequencer_configuration(key, base_url, request_form_filename, sample_form_filename, request_type_filename, email_addresses, return_formatted=True):
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# create request_form
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data = {}
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data['xml_text'] = open(request_form_filename).read()
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request_form = submit(key, "%sforms" % base_url, data, return_formatted=False)[0]
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# create sample_form
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data = {}
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data['xml_text'] = open(sample_form_filename).read()
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sample_form = submit(key, "%sforms" % base_url, data, return_formatted=False)[0]
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# get user ids
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user_ids = [user['id'] for user in get(key, "%susers" % base_url) if user['email'] in email_addresses]
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# create role, assign to user
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data = {}
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data['name'] = "request_type_role_%s_%s_%s name" % (request_form['id'], sample_form['id'], '_'.join(email_addresses))
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data['description'] = "request_type_role_%s_%s_%s description" % (request_form['id'], sample_form['id'], '_'.join(email_addresses))
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data['user_ids'] = user_ids
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role_ids = [role['id'] for role in submit(key, "%sroles" % base_url, data, return_formatted=False)]
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# create request_type
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data = {}
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data['request_form_id'] = request_form['id']
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data['sample_form_id'] = sample_form['id']
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data['role_ids'] = role_ids
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data['xml_text'] = open(request_type_filename).read()
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return submit(key, "%srequest_types" % base_url, data, return_formatted=return_formatted) # create and print out results for request type
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def main():
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try:
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key = sys.argv[1]
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base_url = sys.argv[2]
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request_form_filename = sys.argv[3]
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sample_form_filename = sys.argv[4]
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request_type_filename = sys.argv[5]
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email_addresses = sys.argv[6].split(',')
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except IndexError:
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print('usage: %s key base_url request_form_xml_description_file sample_form_xml_description_file request_type_xml_description_file email_address1[,email_address2]' % os.path.basename(sys.argv[0]))
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sys.exit(1)
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return create_sequencer_configuration(key, base_url, request_form_filename, sample_form_filename, request_type_filename, email_addresses, return_formatted=True)
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if __name__ == "__main__":
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main()
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