mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-11-03 12:53:35 +08:00
Nicola Soranzo
c35d8f2a06
Also: - Rename `FooBarTestCase` test classes as `TestFooBar`. These were collected by pytest only because they were `unittest.TestCase` derived, but normally pytest collects only test classes whose name starts with `Test`, see https://docs.pytest.org/en/7.1.x/reference/reference.html#confval-python_classes
96 lines
4.0 KiB
Python
96 lines
4.0 KiB
Python
from typing import TYPE_CHECKING
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from galaxy_test.driver.integration_setup import PosixFileSourceSetup
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from .framework import (
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selenium_test,
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SeleniumIntegrationTestCase,
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)
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if TYPE_CHECKING:
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from galaxy_test.selenium.framework import SeleniumSessionDatasetPopulator
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class TestDatasetSourceTransformSeleniumIntegration(PosixFileSourceSetup, SeleniumIntegrationTestCase):
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dataset_populator: "SeleniumSessionDatasetPopulator"
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ensure_registered = True
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include_test_data_dir = True
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@selenium_test
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def test_displaying_source_transformations_posixlines(self):
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history_id = self.current_history_id()
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item = {
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"src": "url",
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"url": "gxfiles://testdatafiles/simple_line_no_newline.txt",
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"ext": "txt",
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"to_posix_lines": True,
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}
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output = self.dataset_populator.fetch_hda(history_id, item)
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actions = self.dataset_populator.get_history_dataset_source_transform_actions(
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history_id, dataset=output, assert_ok=True
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)
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assert actions == {"to_posix_lines"}
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details = self._display_first_hid_details()
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transform_element = details.transform_action(action="to_posix_lines").wait_for_visible()
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self.assert_tooltip_text_contains(transform_element, "newline characters in text files")
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self.screenshot("dataset_details_source_transform_to_posix_lines")
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@selenium_test
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def test_displaying_source_transformations_spaces_to_tabs(self):
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history_id = self.current_history_id()
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item = {
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"src": "url",
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"url": "gxfiles://testdatafiles/simple_line_x2_windows.txt",
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"ext": "txt",
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"to_posix_lines": True,
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"space_to_tab": True,
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}
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output = self.dataset_populator.fetch_hda(history_id, item)
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actions = self.dataset_populator.get_history_dataset_source_transform_actions(
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history_id, dataset=output, assert_ok=True
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)
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assert actions == {"spaces_to_tabs", "to_posix_lines"}
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details = self._display_first_hid_details()
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transform_element = details.transform_action(action="spaces_to_tabs").wait_for_visible()
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self.assert_tooltip_text_contains(transform_element, "referenced data source to tabular data", click_away=False)
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self.screenshot("dataset_details_source_transform_spaces_to_tabs")
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@selenium_test
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def test_displaying_source_transformations_grooming(self):
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history_id = self.current_history_id()
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item = {
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"src": "url",
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"url": "gxfiles://testdatafiles/qname_sorted.bam",
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"ext": "bam",
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}
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output = self.dataset_populator.fetch_hda(history_id, item)
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actions = self.dataset_populator.get_history_dataset_source_transform_actions(
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history_id, dataset=output, assert_ok=True
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)
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assert actions == {"datatype_groom"}
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details = self._display_first_hid_details()
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transform_element = details.transform_action(action="datatype_groom").wait_for_visible()
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self.assert_tooltip_text_contains(transform_element, "sorted", click_away=False)
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self.screenshot("dataset_details_source_transform_bam_grooming")
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self.click_center()
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self.assert_tooltip_text_contains(
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transform_element, "Galaxy applied datatype specific cleaning of the supplied data", click_away=False
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)
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def _display_first_hid_details(self):
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self.home()
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self.history_panel_wait_for_hid_ok(1)
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self.history_panel_click_item_title(hid=1, wait=True)
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self.history_panel_item_view_dataset_details(1)
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return self.components.dataset_details
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def setUp(self):
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super().setUp()
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self._write_file_fixtures()
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class TestDatasetSourceTransformInModelStoreSeleniumIntegration(TestDatasetSourceTransformSeleniumIntegration):
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@classmethod
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def handle_galaxy_config_kwds(cls, config):
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super().handle_galaxy_config_kwds(config)
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config["metadata_strategy"] = "extended"
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