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galaxy/test/functional/tools/use_directory_index.xml
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<tool id="use_directory_index" name="Uses directory index" version="1.0" profile="24.2">
<command><![CDATA[
cp '$reference.extra_files_path/1.fasta' '$output'
]]></command>
<inputs>
<param name="reference" type="data" label="Select an index" format="bwa_mem2_index"/>
</inputs>
<outputs>
<data name="output" format="fasta" />
</outputs>
<tests>
<test>
<param name="reference" value="bwa_mem2_index" class="Directory" ftype="bwa_mem2_index"></param>
<output name="output" value="1.fasta" />
</test>
</tests>
</tool>