Greg Von Kuster 04e0834500 Revert 2715.

2008-06-04 13:02:15 +00:00

..

featureCounter.py

Bug fixes, miscellaneous cleanup for flanking_features, windowSplitter, quality_filter, featureCounter, get_flanks.

2008-05-27 14:28:49 +00:00

featureCounter.xml

Modified "feature coverage" tool under regional variation using intervaltree and coverage from bx.

2008-05-11 18:55:35 +00:00

getIndelRates_3way.py

Revert 2715.

2008-06-04 13:02:15 +00:00

getIndelRates_3way.xml

Revert 2715.

2008-06-04 13:02:15 +00:00

getIndels_2way.xml

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

getIndels_3way.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

getIndels.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_cpg_filter.py

Separate framework and tool environments.

2008-04-11 20:11:21 +00:00

maf_cpg_filter.xml

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

parseMAF_smallIndels.pl

Adding new tool to estimate insertion and deletion rates from 3-way alignments.

2008-03-13 16:21:39 +00:00

quality_filter.py

Bug fixes, miscellaneous cleanup for flanking_features, windowSplitter, quality_filter, featureCounter, get_flanks.

2008-05-27 14:28:49 +00:00

quality_filter.xml

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

qv_to_bqv.py

Removed the remainder of the tool version subdirectories.

2008-03-03 18:38:57 +00:00

qv_to_bqv.xml

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

windowSplitter.py

Bug fixes, miscellaneous cleanup for flanking_features, windowSplitter, quality_filter, featureCounter, get_flanks.

2008-05-27 14:28:49 +00:00

windowSplitter.xml

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00