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https://github.com/galaxyproject/galaxy.git
synced 2026-09-01 15:37:32 +08:00
Wolfgang Maier
bd0f257452
Allows moving all data source tools using the script to profile 20.09. For more recent profiles data_source.py would have to work outside of Galaxy's Python environment.
38 lines
1.8 KiB
XML
38 lines
1.8 KiB
XML
<?xml version="1.0"?>
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<tool name="modENCODE worm" id="modENCODEworm" tool_type="data_source" version="1.0.1" profile="20.09">
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<description>server</description>
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<edam_operations>
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<edam_operation>operation_0224</edam_operation>
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</edam_operations>
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<command><![CDATA[
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python '$__tool_directory__/data_source.py' '$output' $__app__.config.output_size_limit
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]]></command>
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<inputs action="http://gbrowse.modencode.org/fgb2/gbrowse/worm" check_values="false" target="_top">
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<display>go to modENCODE worm server $GALAXY_URL</display>
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<param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=modENCODEworm" />
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</inputs>
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<request_param_translation>
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<request_param galaxy_name="dbkey" remote_name="dbkey" missing="ce10" >
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<value_translation>
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<value galaxy_value="ce10" remote_value="worm" />
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</value_translation>
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</request_param>
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<request_param galaxy_name="URL" remote_name="URL" missing="">
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<append_param separator="&" first_separator="?" join="=">
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<value name="d" missing="" />
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<value name="dbkey" missing="ce10" />
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<value name="q" missing="" />
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<value name="s" missing="" />
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<value name="t" missing="" />
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</append_param>
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</request_param>
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<request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
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<request_param galaxy_name="data_type" remote_name="data_type" missing="auto" />
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</request_param_translation>
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<uihints minwidth="800"/>
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<outputs>
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<data name="output" format="txt" label="${tool.name} on $getVar( 'q', 'unknown position' )"/>
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</outputs>
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<options sanitize="False" refresh="True"/>
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</tool>
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