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Nicola Soranzo
59f44cf2be
Also, merge its 3 parameters `gzip_only`, `bz2_only`, `zip_only` into `compressed_formats` (a list of allowed formats). As a consequence of the changes in `get_fileobj()`, update: - `files_diff()` - `get_file_peek()`, which now determines that a file is binary when a `UnicodeDecodeError` exception is raised and doesn't need `is_multi_byte` any more - `iter_headers()` and `get_headers()`, which now return Unicode and don't need `is_multi_byte` parameter any more As a consequence of the changes in `get_file_peek()`, update: - `set_peek()`, which now doesn't need `is_multi_byte` any more As a consequence of the changes in `get_headers()`, update: - `guess_ext` and `is_column_based()`, which now determine that a file is binary when a `UnicodeDecodeError` exception is raised and don't need `is_multi_byte` any more As a consequence of the changes to `guess_ext`, update: - `handle_uploaded_dataset_file() doesn't need `is_multi_byte` any more Also, remove duplicated calls to `get_file_peek()` in lib/galaxy/datatypes/molecules.py and lib/galaxy/datatypes/msa.py The `is_multi_byte` was not removed from the signature of `get_file_peek()` and `set_peek()` in order to preserve compatibility for ToolShed datatypes, thanks @jmchilton for the review.