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John Chilton
6cfe5880e1
Update tool XSD to encourage using fully qualified inputs. Reorganized the existing tests for consistency with other test tools I think. (Rebased with fixes, including XSD fixes from @nsoranzo.)
40 lines
1.6 KiB
XML
40 lines
1.6 KiB
XML
<tool id="collection_paired_conditional_structured_like" name="collection_paired_conditional_structured_like" version="0.1.0">
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<!-- You usually wouldn't want to do this - just write the operation for
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a single dataset and allow the user to map that tool over the whole
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collection. -->
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<command>
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cat '${cond.input1.forward}' > '${list_output.forward}';
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cat '${cond.input1.reverse}' > '${list_output.reverse}'
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</command>
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<inputs>
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<conditional name="cond">
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<param name="cond_param" type="select">
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<option value="paired">Paired</option>
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</param>
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<when value="paired">
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<param name="input1" type="data_collection" collection_type="paired" label="Input" help="Input collection..." format="data" />
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</when>
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</conditional>
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</inputs>
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<outputs>
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<collection name="list_output" structured_like="input1" type="paired" label="Duplicate List" inherit_format="true">
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<!-- inherit_format can be used in conjunction with structured_like
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to perserve format. -->
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</collection>
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</outputs>
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<tests>
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<test>
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<param name="input1">
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<collection type="paired">
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<element name="forward" value="simple_line.txt" ftype="txt" />
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<element name="reverse" value="simple_line_alternative.txt" ftype="txt" />
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</collection>
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</param>
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<output_collection name="list_output" type="paired">
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<element name="forward" file="simple_line.txt" ftype="txt"/>
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<element name="reverse" file="simple_line_alternative.txt" ftype="txt"/>
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</output_collection>
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</test>
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</tests>
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</tool>
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