galaxy

chained_dyndest_rules

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2022-02-03 07:42:20 -05:00

cloudauthz

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2022-02-03 07:42:20 -05:00

delay_rules

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mock_biotools_content/data

Parse edam operation and topic data from bio.tools if available.

2021-09-07 14:29:38 -04:00

objectstore

Can't change API endpoint parameter, is already used

2022-02-10 18:13:34 +01:00

objectstore_selection_rules

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2022-02-03 07:42:20 -05:00

panel_views_1

Allow static panel views without explicit "items" - just start with integrated panel and apply filters.

2021-09-15 10:50:57 -04:00

resubmission_rules

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2022-02-03 07:42:20 -05:00

webdav

Pluggable URI handling across upload components.

2020-07-14 10:09:50 -04:00

__init__.py

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chained_dyndest_job_conf.xml

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conftest.py

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2022-02-03 07:42:20 -05:00

delay_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

dockerized_job_conf.yml

Support setting per-job-environment container resolvers using the container_resolvers key in the environment config.

2021-08-17 10:28:51 -04:00

embedded_pulsar_docker_job_conf.yml

Drop more uWSGI legacy things

2022-03-15 21:32:00 +01:00

embedded_pulsar_job_conf.xml

Use remote_metadata: true when using extended metadata

2021-10-26 17:59:05 +02:00

embedded_pulsar_metadata_extended_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

embedded_pulsar_metadata_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

embedded_pulsar_singularity_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

file_sources_conf_vault.yml

Add new secret type to user preferences that is not sent to client

2021-12-01 10:48:36 +05:30

file_sources_conf.yml

Pluggable URI handling across upload components.

2020-07-14 10:09:50 -04:00

handler_template_job_conf.xml

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io_injection_job_conf.yml

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refgenie.yml

add more tests

2021-03-25 14:01:17 +01:00

resubmission_default_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

resubmission_dynamic_job_conf.xml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

resubmission_job_conf.yml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

resubmission_job_resource_parameters_conf.xml

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resubmission_pulsar_job_conf.xml

Allow specifying useful classes of tools for mapping in job conf.

2021-07-14 13:46:56 -04:00

resubmission_runners.py

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2022-02-03 07:42:20 -05:00

resubmission_small_memory_job_conf.xml

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resubmission_small_memory_resubmission_to_large_job_conf.xml

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resubmission_tool_detected_always_error_job_conf.xml

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resubmission_tool_detected_resubmit_job_conf.xml

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sets_tmp_dir_expression_job_conf.xml

Fix another integration test

2021-02-25 13:49:58 +01:00

sets_tmp_dir_to_true_job_conf.xml

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simple_job_conf.xml

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singularity_job_conf.yml

Support setting per-job-environment container resolvers using the container_resolvers key in the environment config.

2021-08-17 10:28:51 -04:00

test_celery_tasks.py

Disable implicit re-imports across the projects.

2022-03-15 19:58:42 -04:00

test_chained_dynamic_destinations.py

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2022-02-03 07:42:20 -05:00

test_change_datatype_with_store_by_id.py

Move test_assign_column_pja to own class

2020-08-11 14:53:53 +02:00

test_cli_runners.py

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2022-02-03 07:42:20 -05:00

test_config_defaults.py

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test_config_options_users.py

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test_config_schema.py

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test_configuration_decode.py

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test_containerized_jobs.py

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2022-02-03 07:42:20 -05:00

test_data_manager_refgenie.py

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test_data_manager.py

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test_datatype_upload.py

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2022-02-03 07:42:20 -05:00

test_default_permissions.py

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2022-02-03 07:42:20 -05:00

test_dynamic_edam_loading.py

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2022-02-03 07:42:20 -05:00

test_edam_toolbox.py

Implement tool panel views - config, toolbox, search, client.

2021-08-11 10:14:43 -04:00

test_extended_metadata_mapping.py

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2022-02-03 07:42:20 -05:00

test_extended_metadata_outputs_to_working_directory.py

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2022-02-03 07:42:20 -05:00

test_extended_metadata.py

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2022-02-03 07:42:20 -05:00

test_fail_job_tool_unavailable.py

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test_fluent_metrics.py

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test_flush_per_n_datasets.py

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test_galaxy_interactor.py

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2022-02-03 07:42:20 -05:00

test_genomes.py

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2022-02-03 07:42:20 -05:00

test_handler_assignment_methods.py

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2022-02-03 07:42:20 -05:00

test_history_import_export.py

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2022-02-03 07:42:20 -05:00

test_interactivetools_api.py

Raise exception when waiting for entry point

2022-03-15 21:32:00 +01:00

test_job_environments.py

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2022-02-03 07:42:20 -05:00

test_job_outputs_to_working_directory.py

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2022-02-03 07:42:20 -05:00

test_job_recovery.py

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test_job_resubmission.py

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2022-02-03 07:42:20 -05:00

test_kubernetes_runner.py

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test_kubernetes_staging.py

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2022-02-03 07:42:20 -05:00

test_local_job_cancellation.py

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2022-02-03 07:42:20 -05:00

test_max_discovered_files.py

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2022-02-03 07:42:20 -05:00

test_page_revision_json_encoding.py

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2022-02-03 07:42:20 -05:00

test_panel_views.py

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2022-02-03 07:42:20 -05:00

test_pulsar_embedded_containers.py

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2022-02-03 07:42:20 -05:00

test_pulsar_embedded_copy_working.py

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test_pulsar_embedded_extended_metadata.py

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2022-02-03 07:42:20 -05:00

test_pulsar_embedded_mq.py

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2022-02-03 07:42:20 -05:00

test_pulsar_embedded_remote_metadata.py

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2022-02-03 07:42:20 -05:00

test_pulsar_embedded.py

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2022-02-03 07:42:20 -05:00

test_quota.py

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2022-02-03 07:42:20 -05:00

test_remote_files_histories.py

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test_remote_files_posix.py

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2022-02-03 07:42:20 -05:00

test_remote_files.py

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2022-02-03 07:42:20 -05:00

test_repository_operations.py

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2022-02-03 07:42:20 -05:00

test_resolvers.py

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2022-02-03 07:42:20 -05:00

test_save_job_id_on_datasets.py

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2022-02-03 07:42:20 -05:00

test_scripts.py

Add create/migrate scripts for Alembic dbs (squashed)

2022-03-09 18:41:02 -05:00

test_shed_tool_tests.py

Fix tool id not getting updated on tool update

2022-01-19 14:46:31 +01:00

test_tool_data_delete.py

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2022-02-03 07:42:20 -05:00

test_upload_configuration_options.py

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2022-02-03 07:42:20 -05:00

test_vault_extra_prefs.py

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2022-02-03 07:42:20 -05:00

test_vault_file_source.py

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2022-02-03 07:42:20 -05:00

test_web_framework_config.py

First pass in dropping uwsgi specific things

2022-03-15 21:31:59 +01:00

test_webdav.py

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2022-02-03 07:42:20 -05:00

test_work_queue_put_failure.py

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2022-02-03 07:42:20 -05:00

test_workflow_handler_configuration.py

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2022-02-03 07:42:20 -05:00

test_workflow_invocation.py

add integration test for invoking workflows with nonexistent tool_ids or tool_versions

2022-02-10 11:30:36 +01:00

test_workflow_refactoring.py

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2022-02-03 07:42:20 -05:00

test_workflow_scheduling_options.py

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2022-02-03 07:42:20 -05:00

test_workflow_sync.py

Drop support for retired Python 3.5

2020-10-07 11:52:13 +01:00

user_preferences_extra_conf.yml

Change vault api test case to integration test case and add missing conditional requirements

2021-12-20 18:23:00 +05:30

vault_conf.yml

Make sure filesources can access user level and app level vaults

2021-11-28 06:56:35 +05:30

workflow_handler_configuration_job_conf.xml

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