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34 lines
1007 B
XML
34 lines
1007 B
XML
<tool id="interactive_tool_hicbrowser" tool_type="interactive" name="HiCBrowser" version="0.1">
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<requirements>
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<container type="docker">bgruening/hicbrowser</container>
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</requirements>
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<entry_points>
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<entry_point name="HiCBrowser on $infile.display_name" requires_domain="True">
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<port>80</port>
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</entry_point>
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</entry_points>
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<command><![CDATA[
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#set $PROXY_PREFIX = ""
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sed -i "s|PROXY_PREFIX|${PROXY_PREFIX}|" /etc/nginx/conf.d/nginx.conf &&
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rm /data/* -rf &&
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cp '$infile' /data/data_pack.zip &&
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cd /data &&
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unzip data_pack.zip &&
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supervisord &&
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tail -f /var/log/supervisor/*
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]]>
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</command>
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<inputs>
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<param name="infile" type="data" format="zip" label="HiCExplorer archive"/>
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</inputs>
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<outputs>
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<data name="outfile" format="txt" />
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</outputs>
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<tests>
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</tests>
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<help>
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Visualising HiC data with HiCBrowser.
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</help>
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</tool>
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