mirror of
https://github.com/galaxyproject/galaxy.git
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887 lines
32 KiB
Python
887 lines
32 KiB
Python
import os
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from tempfile import (
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mkdtemp,
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mkstemp,
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)
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from uuid import uuid4
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import pytest
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from galaxy.exceptions import ObjectInvalid
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from galaxy.objectstore.azure_blob import AzureBlobObjectStore
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from galaxy.objectstore.cloud import Cloud
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from galaxy.objectstore.pithos import PithosObjectStore
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from galaxy.objectstore.s3 import S3ObjectStore
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from galaxy.objectstore.unittest_utils import (
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Config as TestConfig,
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DISK_TEST_CONFIG,
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DISK_TEST_CONFIG_YAML,
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)
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from galaxy.util import (
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directory_hash_id,
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unlink,
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)
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def test_unlink_path():
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with pytest.raises(FileNotFoundError):
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unlink(uuid4().hex)
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unlink(uuid4().hex, ignore_errors=True)
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fd, path = mkstemp()
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os.close(fd)
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assert os.path.exists(path)
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unlink(path)
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assert not os.path.exists(path)
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def test_disk_store():
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for config_str in [DISK_TEST_CONFIG, DISK_TEST_CONFIG_YAML]:
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with TestConfig(config_str) as (directory, object_store):
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# Test no dataset with id 1 exists.
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absent_dataset = MockDataset(1)
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assert not object_store.exists(absent_dataset)
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# Write empty dataset 2 in second backend, ensure it is empty and
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# exists.
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empty_dataset = MockDataset(2)
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directory.write("", "files1/000/dataset_2.dat")
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assert object_store.exists(empty_dataset)
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assert object_store.empty(empty_dataset)
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# Write non-empty dataset in backend 1, test it is not emtpy & exists.
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hello_world_dataset = MockDataset(3)
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directory.write("Hello World!", "files1/000/dataset_3.dat")
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assert object_store.exists(hello_world_dataset)
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assert not object_store.empty(hello_world_dataset)
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# Test get_data
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data = object_store.get_data(hello_world_dataset)
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assert data == "Hello World!"
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data = object_store.get_data(hello_world_dataset, start=1, count=6)
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assert data == "ello W"
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# Test Size
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# Test absent and empty datasets yield size of 0.
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assert object_store.size(absent_dataset) == 0
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assert object_store.size(empty_dataset) == 0
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# Elsewise
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assert object_store.size(hello_world_dataset) > 0 # Should this always be the number of bytes?
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# Test percent used (to some degree)
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percent_store_used = object_store.get_store_usage_percent()
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assert percent_store_used > 0.0
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assert percent_store_used < 100.0
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# Test update_from_file test
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output_dataset = MockDataset(4)
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output_real_path = os.path.join(directory.temp_directory, "files1", "000", "dataset_4.dat")
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assert not os.path.exists(output_real_path)
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output_working_path = directory.write("NEW CONTENTS", "job_working_directory1/example_output")
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object_store.update_from_file(output_dataset, file_name=output_working_path, create=True)
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assert os.path.exists(output_real_path)
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# Test delete
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to_delete_dataset = MockDataset(5)
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to_delete_real_path = directory.write("content to be deleted!", "files1/000/dataset_5.dat")
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assert object_store.exists(to_delete_dataset)
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assert object_store.delete(to_delete_dataset)
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assert not object_store.exists(to_delete_dataset)
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assert not os.path.exists(to_delete_real_path)
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DISK_TEST_CONFIG_BY_UUID_YAML = """
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type: disk
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files_dir: "${temp_directory}/files1"
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store_by: uuid
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extra_dirs:
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- type: temp
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path: "${temp_directory}/tmp1"
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- type: job_work
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path: "${temp_directory}/job_working_directory1"
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"""
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def test_disk_store_by_uuid():
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for config_str in [DISK_TEST_CONFIG_BY_UUID_YAML]:
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with TestConfig(config_str) as (directory, object_store):
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# Test no dataset with id 1 exists.
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absent_dataset = MockDataset(1)
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assert not object_store.exists(absent_dataset)
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# Write empty dataset 2 in second backend, ensure it is empty and
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# exists.
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empty_dataset = MockDataset(2)
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directory.write("", f"files1/{empty_dataset.rel_path_for_uuid_test()}/dataset_{empty_dataset.uuid}.dat")
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assert object_store.exists(empty_dataset)
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assert object_store.empty(empty_dataset)
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# Write non-empty dataset in backend 1, test it is not emtpy & exists.
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hello_world_dataset = MockDataset(3)
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directory.write(
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"Hello World!",
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f"files1/{hello_world_dataset.rel_path_for_uuid_test()}/dataset_{hello_world_dataset.uuid}.dat",
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)
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assert object_store.exists(hello_world_dataset)
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assert not object_store.empty(hello_world_dataset)
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# Test get_data
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data = object_store.get_data(hello_world_dataset)
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assert data == "Hello World!"
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data = object_store.get_data(hello_world_dataset, start=1, count=6)
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assert data == "ello W"
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# Test Size
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# Test absent and empty datasets yield size of 0.
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assert object_store.size(absent_dataset) == 0
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assert object_store.size(empty_dataset) == 0
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# Elsewise
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assert object_store.size(hello_world_dataset) > 0 # Should this always be the number of bytes?
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# Test percent used (to some degree)
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percent_store_used = object_store.get_store_usage_percent()
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assert percent_store_used > 0.0
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assert percent_store_used < 100.0
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# Test update_from_file test
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output_dataset = MockDataset(4)
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output_real_path = os.path.join(
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directory.temp_directory,
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"files1",
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output_dataset.rel_path_for_uuid_test(),
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"dataset_%s.dat" % output_dataset.uuid,
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)
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assert not os.path.exists(output_real_path)
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output_working_path = directory.write("NEW CONTENTS", "job_working_directory1/example_output")
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object_store.update_from_file(output_dataset, file_name=output_working_path, create=True)
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assert os.path.exists(output_real_path)
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# Test delete
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to_delete_dataset = MockDataset(5)
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to_delete_real_path = directory.write(
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"content to be deleted!",
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f"files1/{to_delete_dataset.rel_path_for_uuid_test()}/dataset_{to_delete_dataset.uuid}.dat",
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)
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assert object_store.exists(to_delete_dataset)
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assert object_store.delete(to_delete_dataset)
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assert not object_store.exists(to_delete_dataset)
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assert not os.path.exists(to_delete_real_path)
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def test_disk_store_alt_name_relpath():
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"""Test that alt_name cannot be used to access arbitrary paths using a
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relative path
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"""
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with TestConfig(DISK_TEST_CONFIG) as (directory, object_store):
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empty_dataset = MockDataset(1)
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directory.write("", "files1/000/dataset_1.dat")
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directory.write("foo", "foo.txt")
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try:
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assert (
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object_store.get_data(empty_dataset, extra_dir="dataset_1_files", alt_name="../../../foo.txt") != "foo"
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)
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except ObjectInvalid:
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pass
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def test_disk_store_alt_name_abspath():
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"""Test that alt_name cannot be used to access arbitrary paths using a
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absolute path
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"""
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with TestConfig(DISK_TEST_CONFIG) as (directory, object_store):
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empty_dataset = MockDataset(1)
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directory.write("", "files1/000/dataset_1.dat")
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absfoo = os.path.abspath(os.path.join(directory.temp_directory, "foo.txt"))
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with open(absfoo, "w") as f:
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f.write("foo")
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try:
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assert object_store.get_data(empty_dataset, extra_dir="dataset_1_files", alt_name=absfoo) != "foo"
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except ObjectInvalid:
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pass
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HIERARCHICAL_TEST_CONFIG = """<?xml version="1.0"?>
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<object_store type="hierarchical">
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<backends>
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<backend id="files1" type="disk" weight="1" order="0" name="Newer Cool Storage">
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<description>
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This is our new storage cluster, check out the storage
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on our institute's system page for [Fancy New Storage](http://computecenter.example.com/systems/fancystorage).
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</description>
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<files_dir path="${temp_directory}/files1"/>
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<extra_dir type="temp" path="${temp_directory}/tmp1"/>
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<extra_dir type="job_work" path="${temp_directory}/job_working_directory1"/>
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</backend>
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<backend id="files2" type="disk" weight="1" order="1" name="Older Legacy Storage">
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<description>
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This is our older legacy storage cluster, check out the storage
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on our institute's system page for [Legacy Storage](http://computecenter.example.com/systems/legacystorage).
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</description>
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<files_dir path="${temp_directory}/files2"/>
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<extra_dir type="temp" path="${temp_directory}/tmp2"/>
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<extra_dir type="job_work" path="${temp_directory}/job_working_directory2"/>
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</backend>
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</backends>
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</object_store>
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"""
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HIERARCHICAL_TEST_CONFIG_YAML = """
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type: hierarchical
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backends:
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- id: files1
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name: Newer Cool Storage
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description: |
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This is our new storage cluster, check out the storage
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on our institute's system page for [Fancy New Storage](http://computecenter.example.com/systems/fancystorage).
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type: disk
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weight: 1
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files_dir: "${temp_directory}/files1"
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extra_dirs:
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- type: temp
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path: "${temp_directory}/tmp1"
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- type: job_work
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path: "${temp_directory}/job_working_directory1"
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- id: files2
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name: Older Legacy Storage
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description: |
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This is our older legacy storage cluster, check out the storage
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on our institute's system page for [Legacy Storage](http://computecenter.example.com/systems/legacystorage).
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type: disk
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weight: 1
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files_dir: "${temp_directory}/files2"
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extra_dirs:
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- type: temp
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path: "${temp_directory}/tmp2"
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- type: job_work
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path: "${temp_directory}/job_working_directory2"
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"""
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def test_hierarchical_store():
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for config_str in [HIERARCHICAL_TEST_CONFIG, HIERARCHICAL_TEST_CONFIG_YAML]:
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with TestConfig(config_str) as (directory, object_store):
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# Test no dataset with id 1 exists.
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assert not object_store.exists(MockDataset(1))
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# Write empty dataset 2 in second backend, ensure it is empty and
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# exists.
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directory.write("", "files2/000/dataset_2.dat")
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assert object_store.exists(MockDataset(2))
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assert object_store.empty(MockDataset(2))
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# Write non-empty dataset in backend 1, test it is not empty & exists.
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directory.write("Hello World!", "files1/000/dataset_3.dat")
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assert object_store.exists(MockDataset(3))
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assert not object_store.empty(MockDataset(3))
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# check and description routed correctly
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files1_desc = object_store.get_concrete_store_description_markdown(MockDataset(3))
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files1_name = object_store.get_concrete_store_name(MockDataset(3))
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files2_desc = object_store.get_concrete_store_description_markdown(MockDataset(2))
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files2_name = object_store.get_concrete_store_name(MockDataset(2))
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assert "fancy" in files1_desc
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assert "Newer Cool" in files1_name
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assert "older" in files2_desc
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assert "Legacy" in files2_name
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# Assert creation always happens in first backend.
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for i in range(100):
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dataset = MockDataset(100 + i)
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object_store.create(dataset)
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assert object_store.get_filename(dataset).find("files1") > 0
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as_dict = object_store.to_dict()
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_assert_has_keys(as_dict, ["backends", "extra_dirs", "type"])
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_assert_key_has_value(as_dict, "type", "hierarchical")
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def test_concrete_name_without_objectstore_id():
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for config_str in [HIERARCHICAL_TEST_CONFIG, HIERARCHICAL_TEST_CONFIG_YAML]:
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with TestConfig(config_str) as (directory, object_store):
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files1_desc = object_store.get_concrete_store_description_markdown(MockDataset(3))
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files1_name = object_store.get_concrete_store_name(MockDataset(3))
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assert files1_desc is None
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assert files1_name is None
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MIXED_STORE_BY_HIERARCHICAL_TEST_CONFIG = """<?xml version="1.0"?>
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<object_store type="hierarchical">
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<backends>
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<backend id="files1" type="disk" weight="1" order="0" store_by="id">
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<files_dir path="${temp_directory}/files1"/>
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<extra_dir type="temp" path="${temp_directory}/tmp1"/>
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<extra_dir type="job_work" path="${temp_directory}/job_working_directory1"/>
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</backend>
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<backend id="files2" type="disk" weight="1" order="1" store_by="uuid">
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<files_dir path="${temp_directory}/files2"/>
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<extra_dir type="temp" path="${temp_directory}/tmp2"/>
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<extra_dir type="job_work" path="${temp_directory}/job_working_directory2"/>
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</backend>
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</backends>
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</object_store>
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"""
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def test_mixed_store_by():
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with TestConfig(MIXED_STORE_BY_HIERARCHICAL_TEST_CONFIG) as (directory, object_store):
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as_dict = object_store.to_dict()
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assert as_dict["backends"][0]["store_by"] == "id"
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assert as_dict["backends"][1]["store_by"] == "uuid"
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DISTRIBUTED_TEST_CONFIG = """<?xml version="1.0"?>
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<object_store type="distributed">
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<backends>
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<backend id="files1" type="disk" weight="2">
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<files_dir path="${temp_directory}/files1"/>
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<extra_dir type="temp" path="${temp_directory}/tmp1"/>
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<extra_dir type="job_work" path="${temp_directory}/job_working_directory1"/>
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</backend>
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<backend id="files2" type="disk" weight="1">
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<files_dir path="${temp_directory}/files2"/>
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<extra_dir type="temp" path="${temp_directory}/tmp2"/>
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<extra_dir type="job_work" path="${temp_directory}/job_working_directory2"/>
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</backend>
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</backends>
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</object_store>
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"""
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DISTRIBUTED_TEST_CONFIG_YAML = """
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type: distributed
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backends:
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- id: files1
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type: disk
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weight: 2
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files_dir: "${temp_directory}/files1"
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extra_dirs:
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- type: temp
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path: "${temp_directory}/tmp1"
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- type: job_work
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path: "${temp_directory}/job_working_directory1"
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- id: files2
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type: disk
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weight: 1
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files_dir: "${temp_directory}/files2"
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extra_dirs:
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- type: temp
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path: "${temp_directory}/tmp2"
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- type: job_work
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path: "${temp_directory}/job_working_directory2"
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"""
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def test_distributed_store():
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for config_str in [DISTRIBUTED_TEST_CONFIG, DISTRIBUTED_TEST_CONFIG_YAML]:
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with TestConfig(config_str) as (directory, object_store):
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persisted_ids = []
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for i in range(100):
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dataset = MockDataset(100 + i)
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object_store.create(dataset)
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persisted_ids.append(dataset.object_store_id)
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# Test distributes datasets between backends according to weights
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backend_1_count = sum(1 for v in persisted_ids if v == "files1")
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backend_2_count = sum(1 for v in persisted_ids if v == "files2")
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assert backend_1_count > 0
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assert backend_2_count > 0
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assert backend_1_count > backend_2_count
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as_dict = object_store.to_dict()
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_assert_has_keys(as_dict, ["backends", "extra_dirs", "type"])
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_assert_key_has_value(as_dict, "type", "distributed")
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extra_dirs = as_dict["extra_dirs"]
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assert len(extra_dirs) == 2
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# Unit testing the cloud and advanced infrastructure object stores is difficult, but
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# we can at least stub out initializing and test the configuration of these things from
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# XML and dicts.
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class UnitializedPithosObjectStore(PithosObjectStore):
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def _initialize(self):
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pass
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class UnitializeS3ObjectStore(S3ObjectStore):
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def _initialize(self):
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pass
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class UnitializedAzureBlobObjectStore(AzureBlobObjectStore):
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def _initialize(self):
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pass
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class UnitializedCloudObjectStore(Cloud):
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def _initialize(self):
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pass
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PITHOS_TEST_CONFIG = """<?xml version="1.0"?>
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<object_store type="pithos">
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<auth url="http://example.org/" token="extoken123" />
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<container name="foo" project="cow" />
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<extra_dir type="temp" path="database/tmp_pithos"/>
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<extra_dir type="job_work" path="database/working_pithos"/>
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</object_store>
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"""
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PITHOS_TEST_CONFIG_YAML = """
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type: pithos
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auth:
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url: http://example.org/
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token: extoken123
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container:
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name: foo
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project: cow
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extra_dirs:
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- type: temp
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path: database/tmp_pithos
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- type: job_work
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path: database/working_pithos
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"""
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def test_config_parse_pithos():
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for config_str in [PITHOS_TEST_CONFIG, PITHOS_TEST_CONFIG_YAML]:
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with TestConfig(config_str, clazz=UnitializedPithosObjectStore) as (directory, object_store):
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configured_config_dict = object_store.config_dict
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_assert_has_keys(configured_config_dict, ["auth", "container", "extra_dirs"])
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auth_dict = configured_config_dict["auth"]
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_assert_key_has_value(auth_dict, "url", "http://example.org/")
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_assert_key_has_value(auth_dict, "token", "extoken123")
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container_dict = configured_config_dict["container"]
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_assert_key_has_value(container_dict, "name", "foo")
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_assert_key_has_value(container_dict, "project", "cow")
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assert object_store.extra_dirs["job_work"] == "database/working_pithos"
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assert object_store.extra_dirs["temp"] == "database/tmp_pithos"
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as_dict = object_store.to_dict()
|
|
_assert_has_keys(as_dict, ["auth", "container", "extra_dirs", "type"])
|
|
|
|
_assert_key_has_value(as_dict, "type", "pithos")
|
|
|
|
auth_dict = as_dict["auth"]
|
|
_assert_key_has_value(auth_dict, "url", "http://example.org/")
|
|
_assert_key_has_value(auth_dict, "token", "extoken123")
|
|
|
|
container_dict = as_dict["container"]
|
|
|
|
_assert_key_has_value(container_dict, "name", "foo")
|
|
_assert_key_has_value(container_dict, "project", "cow")
|
|
|
|
extra_dirs = as_dict["extra_dirs"]
|
|
assert len(extra_dirs) == 2
|
|
|
|
|
|
S3_TEST_CONFIG = """<object_store type="s3">
|
|
<auth access_key="access_moo" secret_key="secret_cow" />
|
|
<bucket name="unique_bucket_name_all_lowercase" use_reduced_redundancy="False" />
|
|
<cache path="database/object_store_cache" size="1000" />
|
|
<extra_dir type="job_work" path="database/job_working_directory_s3"/>
|
|
<extra_dir type="temp" path="database/tmp_s3"/>
|
|
</object_store>
|
|
"""
|
|
|
|
|
|
S3_TEST_CONFIG_YAML = """
|
|
type: s3
|
|
auth:
|
|
access_key: access_moo
|
|
secret_key: secret_cow
|
|
|
|
bucket:
|
|
name: unique_bucket_name_all_lowercase
|
|
use_reduced_redundancy: false
|
|
|
|
cache:
|
|
path: database/object_store_cache
|
|
size: 1000
|
|
|
|
extra_dirs:
|
|
- type: job_work
|
|
path: database/job_working_directory_s3
|
|
- type: temp
|
|
path: database/tmp_s3
|
|
"""
|
|
|
|
|
|
def test_config_parse_s3():
|
|
for config_str in [S3_TEST_CONFIG, S3_TEST_CONFIG_YAML]:
|
|
with TestConfig(config_str, clazz=UnitializeS3ObjectStore) as (directory, object_store):
|
|
assert object_store.access_key == "access_moo"
|
|
assert object_store.secret_key == "secret_cow"
|
|
|
|
assert object_store.bucket == "unique_bucket_name_all_lowercase"
|
|
assert object_store.use_rr is False
|
|
|
|
assert object_store.host is None
|
|
assert object_store.port == 6000
|
|
assert object_store.multipart is True
|
|
assert object_store.is_secure is True
|
|
assert object_store.conn_path == "/"
|
|
|
|
assert object_store.cache_size == 1000
|
|
assert object_store.staging_path == "database/object_store_cache"
|
|
assert object_store.extra_dirs["job_work"] == "database/job_working_directory_s3"
|
|
assert object_store.extra_dirs["temp"] == "database/tmp_s3"
|
|
|
|
as_dict = object_store.to_dict()
|
|
_assert_has_keys(as_dict, ["auth", "bucket", "connection", "cache", "extra_dirs", "type"])
|
|
|
|
_assert_key_has_value(as_dict, "type", "s3")
|
|
|
|
auth_dict = as_dict["auth"]
|
|
bucket_dict = as_dict["bucket"]
|
|
connection_dict = as_dict["connection"]
|
|
cache_dict = as_dict["cache"]
|
|
|
|
_assert_key_has_value(auth_dict, "access_key", "access_moo")
|
|
_assert_key_has_value(auth_dict, "secret_key", "secret_cow")
|
|
|
|
_assert_key_has_value(bucket_dict, "name", "unique_bucket_name_all_lowercase")
|
|
_assert_key_has_value(bucket_dict, "use_reduced_redundancy", False)
|
|
|
|
_assert_key_has_value(connection_dict, "host", None)
|
|
_assert_key_has_value(connection_dict, "port", 6000)
|
|
_assert_key_has_value(connection_dict, "multipart", True)
|
|
_assert_key_has_value(connection_dict, "is_secure", True)
|
|
|
|
_assert_key_has_value(cache_dict, "size", 1000)
|
|
_assert_key_has_value(cache_dict, "path", "database/object_store_cache")
|
|
|
|
extra_dirs = as_dict["extra_dirs"]
|
|
assert len(extra_dirs) == 2
|
|
|
|
|
|
CLOUD_AWS_TEST_CONFIG = """<object_store type="cloud" provider="aws">
|
|
<auth access_key="access_moo" secret_key="secret_cow" />
|
|
<bucket name="unique_bucket_name_all_lowercase" use_reduced_redundancy="False" />
|
|
<cache path="database/object_store_cache" size="1000" />
|
|
<extra_dir type="job_work" path="database/job_working_directory_cloud"/>
|
|
<extra_dir type="temp" path="database/tmp_cloud"/>
|
|
</object_store>
|
|
"""
|
|
|
|
|
|
CLOUD_AWS_TEST_CONFIG_YAML = """
|
|
type: cloud
|
|
provider: aws
|
|
auth:
|
|
access_key: access_moo
|
|
secret_key: secret_cow
|
|
|
|
bucket:
|
|
name: unique_bucket_name_all_lowercase
|
|
use_reduced_redundancy: false
|
|
|
|
cache:
|
|
path: database/object_store_cache
|
|
size: 1000
|
|
|
|
extra_dirs:
|
|
- type: job_work
|
|
path: database/job_working_directory_cloud
|
|
- type: temp
|
|
path: database/tmp_cloud
|
|
"""
|
|
|
|
|
|
CLOUD_AZURE_TEST_CONFIG = """<object_store type="cloud" provider="azure">
|
|
<auth subscription_id="a_sub_id" client_id="and_a_client_id" secret="and_a_secret_key"
|
|
tenant="and_some_tenant_info" />
|
|
<bucket name="unique_bucket_name_all_lowercase" use_reduced_redundancy="False" />
|
|
<cache path="database/object_store_cache" size="1000" />
|
|
<extra_dir type="job_work" path="database/job_working_directory_cloud"/>
|
|
<extra_dir type="temp" path="database/tmp_cloud"/>
|
|
</object_store>
|
|
"""
|
|
|
|
CLOUD_AZURE_TEST_CONFIG_YAML = """
|
|
type: cloud
|
|
provider: azure
|
|
auth:
|
|
subscription_id: a_sub_id
|
|
client_id: and_a_client_id
|
|
secret: and_a_secret_key
|
|
tenant: and_some_tenant_info
|
|
|
|
bucket:
|
|
name: unique_bucket_name_all_lowercase
|
|
use_reduced_redundancy: false
|
|
|
|
cache:
|
|
path: database/object_store_cache
|
|
size: 1000
|
|
|
|
extra_dirs:
|
|
- type: job_work
|
|
path: database/job_working_directory_cloud
|
|
- type: temp
|
|
path: database/tmp_cloud
|
|
"""
|
|
|
|
|
|
CLOUD_GOOGLE_TEST_CONFIG = """<object_store type="cloud" provider="google">
|
|
<auth credentials_file="gcp.config" />
|
|
<bucket name="unique_bucket_name_all_lowercase" use_reduced_redundancy="False" />
|
|
<cache path="database/object_store_cache" size="1000" />
|
|
<extra_dir type="job_work" path="database/job_working_directory_cloud"/>
|
|
<extra_dir type="temp" path="database/tmp_cloud"/>
|
|
</object_store>
|
|
"""
|
|
|
|
CLOUD_GOOGLE_TEST_CONFIG_YAML = """
|
|
type: cloud
|
|
provider: google
|
|
auth:
|
|
credentials_file: gcp.config
|
|
|
|
bucket:
|
|
name: unique_bucket_name_all_lowercase
|
|
use_reduced_redundancy: false
|
|
|
|
cache:
|
|
path: database/object_store_cache
|
|
size: 1000
|
|
|
|
extra_dirs:
|
|
- type: job_work
|
|
path: database/job_working_directory_cloud
|
|
- type: temp
|
|
path: database/tmp_cloud
|
|
"""
|
|
|
|
|
|
def test_config_parse_cloud():
|
|
for config_str in [
|
|
CLOUD_AWS_TEST_CONFIG,
|
|
CLOUD_AWS_TEST_CONFIG_YAML,
|
|
CLOUD_AZURE_TEST_CONFIG,
|
|
CLOUD_AZURE_TEST_CONFIG_YAML,
|
|
CLOUD_GOOGLE_TEST_CONFIG,
|
|
CLOUD_GOOGLE_TEST_CONFIG_YAML,
|
|
]:
|
|
if "google" in config_str:
|
|
tmpdir = mkdtemp()
|
|
if not os.path.exists(tmpdir):
|
|
os.makedirs(tmpdir)
|
|
path = os.path.join(tmpdir, "gcp.config")
|
|
open(path, "w").write("some_gcp_config")
|
|
config_str = config_str.replace("gcp.config", path)
|
|
with TestConfig(config_str, clazz=UnitializedCloudObjectStore) as (directory, object_store):
|
|
|
|
assert object_store.bucket_name == "unique_bucket_name_all_lowercase"
|
|
assert object_store.use_rr is False
|
|
|
|
assert object_store.host is None
|
|
assert object_store.port == 6000
|
|
assert object_store.multipart is True
|
|
assert object_store.is_secure is True
|
|
assert object_store.conn_path == "/"
|
|
|
|
assert object_store.cache_size == 1000.0
|
|
assert object_store.staging_path == "database/object_store_cache"
|
|
assert object_store.extra_dirs["job_work"] == "database/job_working_directory_cloud"
|
|
assert object_store.extra_dirs["temp"] == "database/tmp_cloud"
|
|
|
|
as_dict = object_store.to_dict()
|
|
_assert_has_keys(as_dict, ["provider", "auth", "bucket", "connection", "cache", "extra_dirs", "type"])
|
|
|
|
_assert_key_has_value(as_dict, "type", "cloud")
|
|
|
|
auth_dict = as_dict["auth"]
|
|
bucket_dict = as_dict["bucket"]
|
|
connection_dict = as_dict["connection"]
|
|
cache_dict = as_dict["cache"]
|
|
|
|
provider = as_dict["provider"]
|
|
if provider == "aws":
|
|
_assert_key_has_value(auth_dict, "access_key", "access_moo")
|
|
_assert_key_has_value(auth_dict, "secret_key", "secret_cow")
|
|
elif provider == "azure":
|
|
_assert_key_has_value(auth_dict, "subscription_id", "a_sub_id")
|
|
_assert_key_has_value(auth_dict, "client_id", "and_a_client_id")
|
|
_assert_key_has_value(auth_dict, "secret", "and_a_secret_key")
|
|
_assert_key_has_value(auth_dict, "tenant", "and_some_tenant_info")
|
|
elif provider == "google":
|
|
_assert_key_has_value(auth_dict, "credentials_file", path)
|
|
|
|
_assert_key_has_value(bucket_dict, "name", "unique_bucket_name_all_lowercase")
|
|
_assert_key_has_value(bucket_dict, "use_reduced_redundancy", False)
|
|
|
|
_assert_key_has_value(connection_dict, "host", None)
|
|
_assert_key_has_value(connection_dict, "port", 6000)
|
|
_assert_key_has_value(connection_dict, "multipart", True)
|
|
_assert_key_has_value(connection_dict, "is_secure", True)
|
|
|
|
_assert_key_has_value(cache_dict, "size", 1000.0)
|
|
_assert_key_has_value(cache_dict, "path", "database/object_store_cache")
|
|
|
|
_assert_key_has_value(as_dict, "enable_cache_monitor", False)
|
|
|
|
extra_dirs = as_dict["extra_dirs"]
|
|
assert len(extra_dirs) == 2
|
|
|
|
|
|
CLOUD_AWS_NO_AUTH_TEST_CONFIG = """<object_store type="cloud" provider="aws">
|
|
<auth />
|
|
<bucket name="unique_bucket_name_all_lowercase" use_reduced_redundancy="False" />
|
|
<cache path="database/object_store_cache" size="1000" />
|
|
<extra_dir type="job_work" path="database/job_working_directory_cloud"/>
|
|
<extra_dir type="temp" path="database/tmp_cloud"/>
|
|
</object_store>
|
|
"""
|
|
|
|
|
|
def test_config_parse_cloud_noauth_for_aws():
|
|
for config_str in [CLOUD_AWS_NO_AUTH_TEST_CONFIG]:
|
|
with TestConfig(config_str, clazz=UnitializedCloudObjectStore) as (directory, object_store):
|
|
|
|
assert object_store.bucket_name == "unique_bucket_name_all_lowercase"
|
|
assert object_store.use_rr is False
|
|
|
|
assert object_store.host is None
|
|
assert object_store.port == 6000
|
|
assert object_store.multipart is True
|
|
assert object_store.is_secure is True
|
|
assert object_store.conn_path == "/"
|
|
|
|
assert object_store.cache_size == 1000.0
|
|
assert object_store.staging_path == "database/object_store_cache"
|
|
assert object_store.extra_dirs["job_work"] == "database/job_working_directory_cloud"
|
|
assert object_store.extra_dirs["temp"] == "database/tmp_cloud"
|
|
|
|
as_dict = object_store.to_dict()
|
|
_assert_has_keys(as_dict, ["provider", "auth", "bucket", "connection", "cache", "extra_dirs", "type"])
|
|
|
|
_assert_key_has_value(as_dict, "type", "cloud")
|
|
|
|
auth_dict = as_dict["auth"]
|
|
bucket_dict = as_dict["bucket"]
|
|
connection_dict = as_dict["connection"]
|
|
cache_dict = as_dict["cache"]
|
|
|
|
provider = as_dict["provider"]
|
|
assert provider == "aws"
|
|
print(auth_dict["access_key"])
|
|
_assert_key_has_value(auth_dict, "access_key", None)
|
|
_assert_key_has_value(auth_dict, "secret_key", None)
|
|
|
|
_assert_key_has_value(bucket_dict, "name", "unique_bucket_name_all_lowercase")
|
|
_assert_key_has_value(bucket_dict, "use_reduced_redundancy", False)
|
|
|
|
_assert_key_has_value(connection_dict, "host", None)
|
|
_assert_key_has_value(connection_dict, "port", 6000)
|
|
_assert_key_has_value(connection_dict, "multipart", True)
|
|
_assert_key_has_value(connection_dict, "is_secure", True)
|
|
|
|
_assert_key_has_value(cache_dict, "size", 1000.0)
|
|
_assert_key_has_value(cache_dict, "path", "database/object_store_cache")
|
|
|
|
extra_dirs = as_dict["extra_dirs"]
|
|
assert len(extra_dirs) == 2
|
|
|
|
|
|
AZURE_BLOB_TEST_CONFIG = """<object_store type="azure_blob">
|
|
<auth account_name="azureact" account_key="password123" />
|
|
<container name="unique_container_name" max_chunk_size="250"/>
|
|
<cache path="database/object_store_cache" size="100" />
|
|
<extra_dir type="job_work" path="database/job_working_directory_azure"/>
|
|
<extra_dir type="temp" path="database/tmp_azure"/>
|
|
</object_store>
|
|
"""
|
|
|
|
|
|
AZURE_BLOB_TEST_CONFIG_YAML = """
|
|
type: azure_blob
|
|
auth:
|
|
account_name: azureact
|
|
account_key: password123
|
|
|
|
container:
|
|
name: unique_container_name
|
|
max_chunk_size: 250
|
|
|
|
cache:
|
|
path: database/object_store_cache
|
|
size: 100
|
|
|
|
extra_dirs:
|
|
- type: job_work
|
|
path: database/job_working_directory_azure
|
|
- type: temp
|
|
path: database/tmp_azure
|
|
"""
|
|
|
|
|
|
def test_config_parse_azure():
|
|
for config_str in [AZURE_BLOB_TEST_CONFIG, AZURE_BLOB_TEST_CONFIG_YAML]:
|
|
with TestConfig(config_str, clazz=UnitializedAzureBlobObjectStore) as (directory, object_store):
|
|
assert object_store.account_name == "azureact"
|
|
assert object_store.account_key == "password123"
|
|
|
|
assert object_store.container_name == "unique_container_name"
|
|
assert object_store.max_chunk_size == 250
|
|
|
|
assert object_store.cache_size == 100
|
|
assert object_store.staging_path == "database/object_store_cache"
|
|
assert object_store.extra_dirs["job_work"] == "database/job_working_directory_azure"
|
|
assert object_store.extra_dirs["temp"] == "database/tmp_azure"
|
|
|
|
as_dict = object_store.to_dict()
|
|
_assert_has_keys(as_dict, ["auth", "container", "cache", "extra_dirs", "type"])
|
|
|
|
_assert_key_has_value(as_dict, "type", "azure_blob")
|
|
|
|
auth_dict = as_dict["auth"]
|
|
container_dict = as_dict["container"]
|
|
cache_dict = as_dict["cache"]
|
|
|
|
_assert_key_has_value(auth_dict, "account_name", "azureact")
|
|
_assert_key_has_value(auth_dict, "account_key", "password123")
|
|
|
|
_assert_key_has_value(container_dict, "name", "unique_container_name")
|
|
_assert_key_has_value(container_dict, "max_chunk_size", 250)
|
|
|
|
_assert_key_has_value(cache_dict, "size", 100)
|
|
_assert_key_has_value(cache_dict, "path", "database/object_store_cache")
|
|
|
|
extra_dirs = as_dict["extra_dirs"]
|
|
assert len(extra_dirs) == 2
|
|
|
|
|
|
class MockDataset:
|
|
def __init__(self, id):
|
|
self.id = id
|
|
self.object_store_id = None
|
|
self.uuid = uuid4()
|
|
self.tags = []
|
|
|
|
def rel_path_for_uuid_test(self):
|
|
rel_path = os.path.join(*directory_hash_id(self.uuid))
|
|
return rel_path
|
|
|
|
|
|
def _assert_has_keys(the_dict, keys):
|
|
for key in keys:
|
|
assert key in the_dict, f"key [{key}] not in [{the_dict}]"
|
|
|
|
|
|
def _assert_key_has_value(the_dict, key, value):
|
|
assert key in the_dict, f"dict [{key}] doesn't container expected key [{the_dict}]"
|
|
assert the_dict[key] == value, f"{the_dict[key]} != {value}"
|