Files
galaxy/test/unit/objectstore/test_objectstore.py
T

887 lines
32 KiB
Python

import os
from tempfile import (
mkdtemp,
mkstemp,
)
from uuid import uuid4
import pytest
from galaxy.exceptions import ObjectInvalid
from galaxy.objectstore.azure_blob import AzureBlobObjectStore
from galaxy.objectstore.cloud import Cloud
from galaxy.objectstore.pithos import PithosObjectStore
from galaxy.objectstore.s3 import S3ObjectStore
from galaxy.objectstore.unittest_utils import (
Config as TestConfig,
DISK_TEST_CONFIG,
DISK_TEST_CONFIG_YAML,
)
from galaxy.util import (
directory_hash_id,
unlink,
)
def test_unlink_path():
with pytest.raises(FileNotFoundError):
unlink(uuid4().hex)
unlink(uuid4().hex, ignore_errors=True)
fd, path = mkstemp()
os.close(fd)
assert os.path.exists(path)
unlink(path)
assert not os.path.exists(path)
def test_disk_store():
for config_str in [DISK_TEST_CONFIG, DISK_TEST_CONFIG_YAML]:
with TestConfig(config_str) as (directory, object_store):
# Test no dataset with id 1 exists.
absent_dataset = MockDataset(1)
assert not object_store.exists(absent_dataset)
# Write empty dataset 2 in second backend, ensure it is empty and
# exists.
empty_dataset = MockDataset(2)
directory.write("", "files1/000/dataset_2.dat")
assert object_store.exists(empty_dataset)
assert object_store.empty(empty_dataset)
# Write non-empty dataset in backend 1, test it is not emtpy & exists.
hello_world_dataset = MockDataset(3)
directory.write("Hello World!", "files1/000/dataset_3.dat")
assert object_store.exists(hello_world_dataset)
assert not object_store.empty(hello_world_dataset)
# Test get_data
data = object_store.get_data(hello_world_dataset)
assert data == "Hello World!"
data = object_store.get_data(hello_world_dataset, start=1, count=6)
assert data == "ello W"
# Test Size
# Test absent and empty datasets yield size of 0.
assert object_store.size(absent_dataset) == 0
assert object_store.size(empty_dataset) == 0
# Elsewise
assert object_store.size(hello_world_dataset) > 0 # Should this always be the number of bytes?
# Test percent used (to some degree)
percent_store_used = object_store.get_store_usage_percent()
assert percent_store_used > 0.0
assert percent_store_used < 100.0
# Test update_from_file test
output_dataset = MockDataset(4)
output_real_path = os.path.join(directory.temp_directory, "files1", "000", "dataset_4.dat")
assert not os.path.exists(output_real_path)
output_working_path = directory.write("NEW CONTENTS", "job_working_directory1/example_output")
object_store.update_from_file(output_dataset, file_name=output_working_path, create=True)
assert os.path.exists(output_real_path)
# Test delete
to_delete_dataset = MockDataset(5)
to_delete_real_path = directory.write("content to be deleted!", "files1/000/dataset_5.dat")
assert object_store.exists(to_delete_dataset)
assert object_store.delete(to_delete_dataset)
assert not object_store.exists(to_delete_dataset)
assert not os.path.exists(to_delete_real_path)
DISK_TEST_CONFIG_BY_UUID_YAML = """
type: disk
files_dir: "${temp_directory}/files1"
store_by: uuid
extra_dirs:
- type: temp
path: "${temp_directory}/tmp1"
- type: job_work
path: "${temp_directory}/job_working_directory1"
"""
def test_disk_store_by_uuid():
for config_str in [DISK_TEST_CONFIG_BY_UUID_YAML]:
with TestConfig(config_str) as (directory, object_store):
# Test no dataset with id 1 exists.
absent_dataset = MockDataset(1)
assert not object_store.exists(absent_dataset)
# Write empty dataset 2 in second backend, ensure it is empty and
# exists.
empty_dataset = MockDataset(2)
directory.write("", f"files1/{empty_dataset.rel_path_for_uuid_test()}/dataset_{empty_dataset.uuid}.dat")
assert object_store.exists(empty_dataset)
assert object_store.empty(empty_dataset)
# Write non-empty dataset in backend 1, test it is not emtpy & exists.
hello_world_dataset = MockDataset(3)
directory.write(
"Hello World!",
f"files1/{hello_world_dataset.rel_path_for_uuid_test()}/dataset_{hello_world_dataset.uuid}.dat",
)
assert object_store.exists(hello_world_dataset)
assert not object_store.empty(hello_world_dataset)
# Test get_data
data = object_store.get_data(hello_world_dataset)
assert data == "Hello World!"
data = object_store.get_data(hello_world_dataset, start=1, count=6)
assert data == "ello W"
# Test Size
# Test absent and empty datasets yield size of 0.
assert object_store.size(absent_dataset) == 0
assert object_store.size(empty_dataset) == 0
# Elsewise
assert object_store.size(hello_world_dataset) > 0 # Should this always be the number of bytes?
# Test percent used (to some degree)
percent_store_used = object_store.get_store_usage_percent()
assert percent_store_used > 0.0
assert percent_store_used < 100.0
# Test update_from_file test
output_dataset = MockDataset(4)
output_real_path = os.path.join(
directory.temp_directory,
"files1",
output_dataset.rel_path_for_uuid_test(),
"dataset_%s.dat" % output_dataset.uuid,
)
assert not os.path.exists(output_real_path)
output_working_path = directory.write("NEW CONTENTS", "job_working_directory1/example_output")
object_store.update_from_file(output_dataset, file_name=output_working_path, create=True)
assert os.path.exists(output_real_path)
# Test delete
to_delete_dataset = MockDataset(5)
to_delete_real_path = directory.write(
"content to be deleted!",
f"files1/{to_delete_dataset.rel_path_for_uuid_test()}/dataset_{to_delete_dataset.uuid}.dat",
)
assert object_store.exists(to_delete_dataset)
assert object_store.delete(to_delete_dataset)
assert not object_store.exists(to_delete_dataset)
assert not os.path.exists(to_delete_real_path)
def test_disk_store_alt_name_relpath():
"""Test that alt_name cannot be used to access arbitrary paths using a
relative path
"""
with TestConfig(DISK_TEST_CONFIG) as (directory, object_store):
empty_dataset = MockDataset(1)
directory.write("", "files1/000/dataset_1.dat")
directory.write("foo", "foo.txt")
try:
assert (
object_store.get_data(empty_dataset, extra_dir="dataset_1_files", alt_name="../../../foo.txt") != "foo"
)
except ObjectInvalid:
pass
def test_disk_store_alt_name_abspath():
"""Test that alt_name cannot be used to access arbitrary paths using a
absolute path
"""
with TestConfig(DISK_TEST_CONFIG) as (directory, object_store):
empty_dataset = MockDataset(1)
directory.write("", "files1/000/dataset_1.dat")
absfoo = os.path.abspath(os.path.join(directory.temp_directory, "foo.txt"))
with open(absfoo, "w") as f:
f.write("foo")
try:
assert object_store.get_data(empty_dataset, extra_dir="dataset_1_files", alt_name=absfoo) != "foo"
except ObjectInvalid:
pass
HIERARCHICAL_TEST_CONFIG = """<?xml version="1.0"?>
<object_store type="hierarchical">
<backends>
<backend id="files1" type="disk" weight="1" order="0" name="Newer Cool Storage">
<description>
This is our new storage cluster, check out the storage
on our institute's system page for [Fancy New Storage](http://computecenter.example.com/systems/fancystorage).
</description>
<files_dir path="${temp_directory}/files1"/>
<extra_dir type="temp" path="${temp_directory}/tmp1"/>
<extra_dir type="job_work" path="${temp_directory}/job_working_directory1"/>
</backend>
<backend id="files2" type="disk" weight="1" order="1" name="Older Legacy Storage">
<description>
This is our older legacy storage cluster, check out the storage
on our institute's system page for [Legacy Storage](http://computecenter.example.com/systems/legacystorage).
</description>
<files_dir path="${temp_directory}/files2"/>
<extra_dir type="temp" path="${temp_directory}/tmp2"/>
<extra_dir type="job_work" path="${temp_directory}/job_working_directory2"/>
</backend>
</backends>
</object_store>
"""
HIERARCHICAL_TEST_CONFIG_YAML = """
type: hierarchical
backends:
- id: files1
name: Newer Cool Storage
description: |
This is our new storage cluster, check out the storage
on our institute's system page for [Fancy New Storage](http://computecenter.example.com/systems/fancystorage).
type: disk
weight: 1
files_dir: "${temp_directory}/files1"
extra_dirs:
- type: temp
path: "${temp_directory}/tmp1"
- type: job_work
path: "${temp_directory}/job_working_directory1"
- id: files2
name: Older Legacy Storage
description: |
This is our older legacy storage cluster, check out the storage
on our institute's system page for [Legacy Storage](http://computecenter.example.com/systems/legacystorage).
type: disk
weight: 1
files_dir: "${temp_directory}/files2"
extra_dirs:
- type: temp
path: "${temp_directory}/tmp2"
- type: job_work
path: "${temp_directory}/job_working_directory2"
"""
def test_hierarchical_store():
for config_str in [HIERARCHICAL_TEST_CONFIG, HIERARCHICAL_TEST_CONFIG_YAML]:
with TestConfig(config_str) as (directory, object_store):
# Test no dataset with id 1 exists.
assert not object_store.exists(MockDataset(1))
# Write empty dataset 2 in second backend, ensure it is empty and
# exists.
directory.write("", "files2/000/dataset_2.dat")
assert object_store.exists(MockDataset(2))
assert object_store.empty(MockDataset(2))
# Write non-empty dataset in backend 1, test it is not empty & exists.
directory.write("Hello World!", "files1/000/dataset_3.dat")
assert object_store.exists(MockDataset(3))
assert not object_store.empty(MockDataset(3))
# check and description routed correctly
files1_desc = object_store.get_concrete_store_description_markdown(MockDataset(3))
files1_name = object_store.get_concrete_store_name(MockDataset(3))
files2_desc = object_store.get_concrete_store_description_markdown(MockDataset(2))
files2_name = object_store.get_concrete_store_name(MockDataset(2))
assert "fancy" in files1_desc
assert "Newer Cool" in files1_name
assert "older" in files2_desc
assert "Legacy" in files2_name
# Assert creation always happens in first backend.
for i in range(100):
dataset = MockDataset(100 + i)
object_store.create(dataset)
assert object_store.get_filename(dataset).find("files1") > 0
as_dict = object_store.to_dict()
_assert_has_keys(as_dict, ["backends", "extra_dirs", "type"])
_assert_key_has_value(as_dict, "type", "hierarchical")
def test_concrete_name_without_objectstore_id():
for config_str in [HIERARCHICAL_TEST_CONFIG, HIERARCHICAL_TEST_CONFIG_YAML]:
with TestConfig(config_str) as (directory, object_store):
files1_desc = object_store.get_concrete_store_description_markdown(MockDataset(3))
files1_name = object_store.get_concrete_store_name(MockDataset(3))
assert files1_desc is None
assert files1_name is None
MIXED_STORE_BY_HIERARCHICAL_TEST_CONFIG = """<?xml version="1.0"?>
<object_store type="hierarchical">
<backends>
<backend id="files1" type="disk" weight="1" order="0" store_by="id">
<files_dir path="${temp_directory}/files1"/>
<extra_dir type="temp" path="${temp_directory}/tmp1"/>
<extra_dir type="job_work" path="${temp_directory}/job_working_directory1"/>
</backend>
<backend id="files2" type="disk" weight="1" order="1" store_by="uuid">
<files_dir path="${temp_directory}/files2"/>
<extra_dir type="temp" path="${temp_directory}/tmp2"/>
<extra_dir type="job_work" path="${temp_directory}/job_working_directory2"/>
</backend>
</backends>
</object_store>
"""
def test_mixed_store_by():
with TestConfig(MIXED_STORE_BY_HIERARCHICAL_TEST_CONFIG) as (directory, object_store):
as_dict = object_store.to_dict()
assert as_dict["backends"][0]["store_by"] == "id"
assert as_dict["backends"][1]["store_by"] == "uuid"
DISTRIBUTED_TEST_CONFIG = """<?xml version="1.0"?>
<object_store type="distributed">
<backends>
<backend id="files1" type="disk" weight="2">
<files_dir path="${temp_directory}/files1"/>
<extra_dir type="temp" path="${temp_directory}/tmp1"/>
<extra_dir type="job_work" path="${temp_directory}/job_working_directory1"/>
</backend>
<backend id="files2" type="disk" weight="1">
<files_dir path="${temp_directory}/files2"/>
<extra_dir type="temp" path="${temp_directory}/tmp2"/>
<extra_dir type="job_work" path="${temp_directory}/job_working_directory2"/>
</backend>
</backends>
</object_store>
"""
DISTRIBUTED_TEST_CONFIG_YAML = """
type: distributed
backends:
- id: files1
type: disk
weight: 2
files_dir: "${temp_directory}/files1"
extra_dirs:
- type: temp
path: "${temp_directory}/tmp1"
- type: job_work
path: "${temp_directory}/job_working_directory1"
- id: files2
type: disk
weight: 1
files_dir: "${temp_directory}/files2"
extra_dirs:
- type: temp
path: "${temp_directory}/tmp2"
- type: job_work
path: "${temp_directory}/job_working_directory2"
"""
def test_distributed_store():
for config_str in [DISTRIBUTED_TEST_CONFIG, DISTRIBUTED_TEST_CONFIG_YAML]:
with TestConfig(config_str) as (directory, object_store):
persisted_ids = []
for i in range(100):
dataset = MockDataset(100 + i)
object_store.create(dataset)
persisted_ids.append(dataset.object_store_id)
# Test distributes datasets between backends according to weights
backend_1_count = sum(1 for v in persisted_ids if v == "files1")
backend_2_count = sum(1 for v in persisted_ids if v == "files2")
assert backend_1_count > 0
assert backend_2_count > 0
assert backend_1_count > backend_2_count
as_dict = object_store.to_dict()
_assert_has_keys(as_dict, ["backends", "extra_dirs", "type"])
_assert_key_has_value(as_dict, "type", "distributed")
extra_dirs = as_dict["extra_dirs"]
assert len(extra_dirs) == 2
# Unit testing the cloud and advanced infrastructure object stores is difficult, but
# we can at least stub out initializing and test the configuration of these things from
# XML and dicts.
class UnitializedPithosObjectStore(PithosObjectStore):
def _initialize(self):
pass
class UnitializeS3ObjectStore(S3ObjectStore):
def _initialize(self):
pass
class UnitializedAzureBlobObjectStore(AzureBlobObjectStore):
def _initialize(self):
pass
class UnitializedCloudObjectStore(Cloud):
def _initialize(self):
pass
PITHOS_TEST_CONFIG = """<?xml version="1.0"?>
<object_store type="pithos">
<auth url="http://example.org/" token="extoken123" />
<container name="foo" project="cow" />
<extra_dir type="temp" path="database/tmp_pithos"/>
<extra_dir type="job_work" path="database/working_pithos"/>
</object_store>
"""
PITHOS_TEST_CONFIG_YAML = """
type: pithos
auth:
url: http://example.org/
token: extoken123
container:
name: foo
project: cow
extra_dirs:
- type: temp
path: database/tmp_pithos
- type: job_work
path: database/working_pithos
"""
def test_config_parse_pithos():
for config_str in [PITHOS_TEST_CONFIG, PITHOS_TEST_CONFIG_YAML]:
with TestConfig(config_str, clazz=UnitializedPithosObjectStore) as (directory, object_store):
configured_config_dict = object_store.config_dict
_assert_has_keys(configured_config_dict, ["auth", "container", "extra_dirs"])
auth_dict = configured_config_dict["auth"]
_assert_key_has_value(auth_dict, "url", "http://example.org/")
_assert_key_has_value(auth_dict, "token", "extoken123")
container_dict = configured_config_dict["container"]
_assert_key_has_value(container_dict, "name", "foo")
_assert_key_has_value(container_dict, "project", "cow")
assert object_store.extra_dirs["job_work"] == "database/working_pithos"
assert object_store.extra_dirs["temp"] == "database/tmp_pithos"
as_dict = object_store.to_dict()
_assert_has_keys(as_dict, ["auth", "container", "extra_dirs", "type"])
_assert_key_has_value(as_dict, "type", "pithos")
auth_dict = as_dict["auth"]
_assert_key_has_value(auth_dict, "url", "http://example.org/")
_assert_key_has_value(auth_dict, "token", "extoken123")
container_dict = as_dict["container"]
_assert_key_has_value(container_dict, "name", "foo")
_assert_key_has_value(container_dict, "project", "cow")
extra_dirs = as_dict["extra_dirs"]
assert len(extra_dirs) == 2
S3_TEST_CONFIG = """<object_store type="s3">
<auth access_key="access_moo" secret_key="secret_cow" />
<bucket name="unique_bucket_name_all_lowercase" use_reduced_redundancy="False" />
<cache path="database/object_store_cache" size="1000" />
<extra_dir type="job_work" path="database/job_working_directory_s3"/>
<extra_dir type="temp" path="database/tmp_s3"/>
</object_store>
"""
S3_TEST_CONFIG_YAML = """
type: s3
auth:
access_key: access_moo
secret_key: secret_cow
bucket:
name: unique_bucket_name_all_lowercase
use_reduced_redundancy: false
cache:
path: database/object_store_cache
size: 1000
extra_dirs:
- type: job_work
path: database/job_working_directory_s3
- type: temp
path: database/tmp_s3
"""
def test_config_parse_s3():
for config_str in [S3_TEST_CONFIG, S3_TEST_CONFIG_YAML]:
with TestConfig(config_str, clazz=UnitializeS3ObjectStore) as (directory, object_store):
assert object_store.access_key == "access_moo"
assert object_store.secret_key == "secret_cow"
assert object_store.bucket == "unique_bucket_name_all_lowercase"
assert object_store.use_rr is False
assert object_store.host is None
assert object_store.port == 6000
assert object_store.multipart is True
assert object_store.is_secure is True
assert object_store.conn_path == "/"
assert object_store.cache_size == 1000
assert object_store.staging_path == "database/object_store_cache"
assert object_store.extra_dirs["job_work"] == "database/job_working_directory_s3"
assert object_store.extra_dirs["temp"] == "database/tmp_s3"
as_dict = object_store.to_dict()
_assert_has_keys(as_dict, ["auth", "bucket", "connection", "cache", "extra_dirs", "type"])
_assert_key_has_value(as_dict, "type", "s3")
auth_dict = as_dict["auth"]
bucket_dict = as_dict["bucket"]
connection_dict = as_dict["connection"]
cache_dict = as_dict["cache"]
_assert_key_has_value(auth_dict, "access_key", "access_moo")
_assert_key_has_value(auth_dict, "secret_key", "secret_cow")
_assert_key_has_value(bucket_dict, "name", "unique_bucket_name_all_lowercase")
_assert_key_has_value(bucket_dict, "use_reduced_redundancy", False)
_assert_key_has_value(connection_dict, "host", None)
_assert_key_has_value(connection_dict, "port", 6000)
_assert_key_has_value(connection_dict, "multipart", True)
_assert_key_has_value(connection_dict, "is_secure", True)
_assert_key_has_value(cache_dict, "size", 1000)
_assert_key_has_value(cache_dict, "path", "database/object_store_cache")
extra_dirs = as_dict["extra_dirs"]
assert len(extra_dirs) == 2
CLOUD_AWS_TEST_CONFIG = """<object_store type="cloud" provider="aws">
<auth access_key="access_moo" secret_key="secret_cow" />
<bucket name="unique_bucket_name_all_lowercase" use_reduced_redundancy="False" />
<cache path="database/object_store_cache" size="1000" />
<extra_dir type="job_work" path="database/job_working_directory_cloud"/>
<extra_dir type="temp" path="database/tmp_cloud"/>
</object_store>
"""
CLOUD_AWS_TEST_CONFIG_YAML = """
type: cloud
provider: aws
auth:
access_key: access_moo
secret_key: secret_cow
bucket:
name: unique_bucket_name_all_lowercase
use_reduced_redundancy: false
cache:
path: database/object_store_cache
size: 1000
extra_dirs:
- type: job_work
path: database/job_working_directory_cloud
- type: temp
path: database/tmp_cloud
"""
CLOUD_AZURE_TEST_CONFIG = """<object_store type="cloud" provider="azure">
<auth subscription_id="a_sub_id" client_id="and_a_client_id" secret="and_a_secret_key"
tenant="and_some_tenant_info" />
<bucket name="unique_bucket_name_all_lowercase" use_reduced_redundancy="False" />
<cache path="database/object_store_cache" size="1000" />
<extra_dir type="job_work" path="database/job_working_directory_cloud"/>
<extra_dir type="temp" path="database/tmp_cloud"/>
</object_store>
"""
CLOUD_AZURE_TEST_CONFIG_YAML = """
type: cloud
provider: azure
auth:
subscription_id: a_sub_id
client_id: and_a_client_id
secret: and_a_secret_key
tenant: and_some_tenant_info
bucket:
name: unique_bucket_name_all_lowercase
use_reduced_redundancy: false
cache:
path: database/object_store_cache
size: 1000
extra_dirs:
- type: job_work
path: database/job_working_directory_cloud
- type: temp
path: database/tmp_cloud
"""
CLOUD_GOOGLE_TEST_CONFIG = """<object_store type="cloud" provider="google">
<auth credentials_file="gcp.config" />
<bucket name="unique_bucket_name_all_lowercase" use_reduced_redundancy="False" />
<cache path="database/object_store_cache" size="1000" />
<extra_dir type="job_work" path="database/job_working_directory_cloud"/>
<extra_dir type="temp" path="database/tmp_cloud"/>
</object_store>
"""
CLOUD_GOOGLE_TEST_CONFIG_YAML = """
type: cloud
provider: google
auth:
credentials_file: gcp.config
bucket:
name: unique_bucket_name_all_lowercase
use_reduced_redundancy: false
cache:
path: database/object_store_cache
size: 1000
extra_dirs:
- type: job_work
path: database/job_working_directory_cloud
- type: temp
path: database/tmp_cloud
"""
def test_config_parse_cloud():
for config_str in [
CLOUD_AWS_TEST_CONFIG,
CLOUD_AWS_TEST_CONFIG_YAML,
CLOUD_AZURE_TEST_CONFIG,
CLOUD_AZURE_TEST_CONFIG_YAML,
CLOUD_GOOGLE_TEST_CONFIG,
CLOUD_GOOGLE_TEST_CONFIG_YAML,
]:
if "google" in config_str:
tmpdir = mkdtemp()
if not os.path.exists(tmpdir):
os.makedirs(tmpdir)
path = os.path.join(tmpdir, "gcp.config")
open(path, "w").write("some_gcp_config")
config_str = config_str.replace("gcp.config", path)
with TestConfig(config_str, clazz=UnitializedCloudObjectStore) as (directory, object_store):
assert object_store.bucket_name == "unique_bucket_name_all_lowercase"
assert object_store.use_rr is False
assert object_store.host is None
assert object_store.port == 6000
assert object_store.multipart is True
assert object_store.is_secure is True
assert object_store.conn_path == "/"
assert object_store.cache_size == 1000.0
assert object_store.staging_path == "database/object_store_cache"
assert object_store.extra_dirs["job_work"] == "database/job_working_directory_cloud"
assert object_store.extra_dirs["temp"] == "database/tmp_cloud"
as_dict = object_store.to_dict()
_assert_has_keys(as_dict, ["provider", "auth", "bucket", "connection", "cache", "extra_dirs", "type"])
_assert_key_has_value(as_dict, "type", "cloud")
auth_dict = as_dict["auth"]
bucket_dict = as_dict["bucket"]
connection_dict = as_dict["connection"]
cache_dict = as_dict["cache"]
provider = as_dict["provider"]
if provider == "aws":
_assert_key_has_value(auth_dict, "access_key", "access_moo")
_assert_key_has_value(auth_dict, "secret_key", "secret_cow")
elif provider == "azure":
_assert_key_has_value(auth_dict, "subscription_id", "a_sub_id")
_assert_key_has_value(auth_dict, "client_id", "and_a_client_id")
_assert_key_has_value(auth_dict, "secret", "and_a_secret_key")
_assert_key_has_value(auth_dict, "tenant", "and_some_tenant_info")
elif provider == "google":
_assert_key_has_value(auth_dict, "credentials_file", path)
_assert_key_has_value(bucket_dict, "name", "unique_bucket_name_all_lowercase")
_assert_key_has_value(bucket_dict, "use_reduced_redundancy", False)
_assert_key_has_value(connection_dict, "host", None)
_assert_key_has_value(connection_dict, "port", 6000)
_assert_key_has_value(connection_dict, "multipart", True)
_assert_key_has_value(connection_dict, "is_secure", True)
_assert_key_has_value(cache_dict, "size", 1000.0)
_assert_key_has_value(cache_dict, "path", "database/object_store_cache")
_assert_key_has_value(as_dict, "enable_cache_monitor", False)
extra_dirs = as_dict["extra_dirs"]
assert len(extra_dirs) == 2
CLOUD_AWS_NO_AUTH_TEST_CONFIG = """<object_store type="cloud" provider="aws">
<auth />
<bucket name="unique_bucket_name_all_lowercase" use_reduced_redundancy="False" />
<cache path="database/object_store_cache" size="1000" />
<extra_dir type="job_work" path="database/job_working_directory_cloud"/>
<extra_dir type="temp" path="database/tmp_cloud"/>
</object_store>
"""
def test_config_parse_cloud_noauth_for_aws():
for config_str in [CLOUD_AWS_NO_AUTH_TEST_CONFIG]:
with TestConfig(config_str, clazz=UnitializedCloudObjectStore) as (directory, object_store):
assert object_store.bucket_name == "unique_bucket_name_all_lowercase"
assert object_store.use_rr is False
assert object_store.host is None
assert object_store.port == 6000
assert object_store.multipart is True
assert object_store.is_secure is True
assert object_store.conn_path == "/"
assert object_store.cache_size == 1000.0
assert object_store.staging_path == "database/object_store_cache"
assert object_store.extra_dirs["job_work"] == "database/job_working_directory_cloud"
assert object_store.extra_dirs["temp"] == "database/tmp_cloud"
as_dict = object_store.to_dict()
_assert_has_keys(as_dict, ["provider", "auth", "bucket", "connection", "cache", "extra_dirs", "type"])
_assert_key_has_value(as_dict, "type", "cloud")
auth_dict = as_dict["auth"]
bucket_dict = as_dict["bucket"]
connection_dict = as_dict["connection"]
cache_dict = as_dict["cache"]
provider = as_dict["provider"]
assert provider == "aws"
print(auth_dict["access_key"])
_assert_key_has_value(auth_dict, "access_key", None)
_assert_key_has_value(auth_dict, "secret_key", None)
_assert_key_has_value(bucket_dict, "name", "unique_bucket_name_all_lowercase")
_assert_key_has_value(bucket_dict, "use_reduced_redundancy", False)
_assert_key_has_value(connection_dict, "host", None)
_assert_key_has_value(connection_dict, "port", 6000)
_assert_key_has_value(connection_dict, "multipart", True)
_assert_key_has_value(connection_dict, "is_secure", True)
_assert_key_has_value(cache_dict, "size", 1000.0)
_assert_key_has_value(cache_dict, "path", "database/object_store_cache")
extra_dirs = as_dict["extra_dirs"]
assert len(extra_dirs) == 2
AZURE_BLOB_TEST_CONFIG = """<object_store type="azure_blob">
<auth account_name="azureact" account_key="password123" />
<container name="unique_container_name" max_chunk_size="250"/>
<cache path="database/object_store_cache" size="100" />
<extra_dir type="job_work" path="database/job_working_directory_azure"/>
<extra_dir type="temp" path="database/tmp_azure"/>
</object_store>
"""
AZURE_BLOB_TEST_CONFIG_YAML = """
type: azure_blob
auth:
account_name: azureact
account_key: password123
container:
name: unique_container_name
max_chunk_size: 250
cache:
path: database/object_store_cache
size: 100
extra_dirs:
- type: job_work
path: database/job_working_directory_azure
- type: temp
path: database/tmp_azure
"""
def test_config_parse_azure():
for config_str in [AZURE_BLOB_TEST_CONFIG, AZURE_BLOB_TEST_CONFIG_YAML]:
with TestConfig(config_str, clazz=UnitializedAzureBlobObjectStore) as (directory, object_store):
assert object_store.account_name == "azureact"
assert object_store.account_key == "password123"
assert object_store.container_name == "unique_container_name"
assert object_store.max_chunk_size == 250
assert object_store.cache_size == 100
assert object_store.staging_path == "database/object_store_cache"
assert object_store.extra_dirs["job_work"] == "database/job_working_directory_azure"
assert object_store.extra_dirs["temp"] == "database/tmp_azure"
as_dict = object_store.to_dict()
_assert_has_keys(as_dict, ["auth", "container", "cache", "extra_dirs", "type"])
_assert_key_has_value(as_dict, "type", "azure_blob")
auth_dict = as_dict["auth"]
container_dict = as_dict["container"]
cache_dict = as_dict["cache"]
_assert_key_has_value(auth_dict, "account_name", "azureact")
_assert_key_has_value(auth_dict, "account_key", "password123")
_assert_key_has_value(container_dict, "name", "unique_container_name")
_assert_key_has_value(container_dict, "max_chunk_size", 250)
_assert_key_has_value(cache_dict, "size", 100)
_assert_key_has_value(cache_dict, "path", "database/object_store_cache")
extra_dirs = as_dict["extra_dirs"]
assert len(extra_dirs) == 2
class MockDataset:
def __init__(self, id):
self.id = id
self.object_store_id = None
self.uuid = uuid4()
self.tags = []
def rel_path_for_uuid_test(self):
rel_path = os.path.join(*directory_hash_id(self.uuid))
return rel_path
def _assert_has_keys(the_dict, keys):
for key in keys:
assert key in the_dict, f"key [{key}] not in [{the_dict}]"
def _assert_key_has_value(the_dict, key, value):
assert key in the_dict, f"dict [{key}] doesn't container expected key [{the_dict}]"
assert the_dict[key] == value, f"{the_dict[key]} != {value}"