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41 lines
1.1 KiB
XML
41 lines
1.1 KiB
XML
<tool id="solid_qual_boxplot" name="Draw quality score boxplot" version="1.0.0">
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<description>for SOLiD data</description>
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<command interpreter="bash">qualsolid_boxplot_graph.sh -t '$input.name' -i $input -o $output</command>
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<inputs>
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<param format="txt" name="input" type="data" label="Statistics report file (output of 'Quality Statistics for SOLiD data' tool)" />
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</inputs>
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<outputs>
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<data format="png" name="output" metadata_source="input" />
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</outputs>
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<help>
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**What it does**
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Creates a boxplot graph for the quality scores in the library.
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.. class:: infomark
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**TIP:** Use the **Quality Statistics for SOLiD data** tool to generate the report file needed for this tool.
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-----
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**Output Example**
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* Black horizontal lines are medians
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* Rectangular red boxes show the Inter-quartile Range (IQR) (top value is Q3, bottom value is Q1)
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* Whiskers show outliers at max. 1.5*IQR
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.. image:: ${static_path}/images/solid_qual.png
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------
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This tool is based on `FASTX-toolkit`__ by Assaf Gordon.
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.. __: http://hannonlab.cshl.edu/fastx_toolkit/
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</help>
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</tool>
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