Matthias Bernt 13b7fb1bc2 partially revert d674f2ba6e ...

and add comment to interval2maf tool stating that it's deprecated

2022-09-26 11:24:56 +02:00

..

__init__.py

Check types of modules without type annotations in the their signatures on new modules.

2021-10-11 16:08:26 -04:00

genebed_maf_to_fasta.xml

Lint some tools

2017-01-23 21:11:43 +00:00

interval2maf_pairwise.xml

Lint some tools

2017-01-23 21:11:43 +00:00

interval2maf.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

interval2maf.xml

partially revert d674f2ba6e

2022-09-26 11:24:56 +02:00

interval_maf_to_merged_fasta.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

interval_maf_to_merged_fasta.xml

Lint some tools

2017-01-23 21:11:43 +00:00

macros.xml

Lint some tools

2017-01-23 21:11:43 +00:00

maf_by_block_number.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_by_block_number.xml

Lint some tools

2017-01-23 21:11:43 +00:00

maf_filter.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_filter.xml

Lint some tools

2017-01-23 21:11:43 +00:00

maf_limit_size.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_limit_size.xml

Lint some tools

2017-01-23 21:11:43 +00:00

maf_limit_to_species.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_limit_to_species.xml

Lint some tools

2017-01-23 21:11:43 +00:00

maf_reverse_complement.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_reverse_complement.xml

Lint some tools

2017-01-23 21:11:43 +00:00

maf_split_by_species.py

Fix remaining issues reported by bugbear; add it to flake8 reqs

2021-01-16 05:58:15 +00:00

maf_split_by_species.xml

Sort maf_split_by_species test output

2018-09-05 14:22:01 +02:00

maf_stats.py

Rename variables to fix B020 (false positive) errors

2022-03-26 23:43:08 +00:00

maf_stats.xml

Lint some tools

2017-01-23 21:11:43 +00:00

maf_thread_for_species.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_thread_for_species.xml

Lint some tools

2017-01-23 21:11:43 +00:00

maf_to_bed_code.py

Fix all E201 and E202 style errors

2017-08-17 11:35:39 +01:00

maf_to_bed.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_to_bed.xml

Adjust bx-python imports for https://github.com/bxlab/bx-python/commit/fd08da3b49e89e0accd2c372d4a99427628ce432

2020-02-19 10:53:24 +01:00

maf_to_fasta_concat.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_to_fasta_multiple_sets.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_to_fasta.xml

Lint some tools

2017-01-23 21:11:43 +00:00

maf_to_interval.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

maf_to_interval.xml

Specify maf ftype in maf_to_interval.xml

2018-09-05 14:22:01 +02:00

vcf_to_maf_customtrack.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

vcf_to_maf_customtrack.xml

Bump version and add profile

2020-02-12 09:47:36 +01:00