galaxy

mirror of https://github.com/galaxyproject/galaxy.git synced 2026-09-24 16:30:27 +08:00

Files

T

Eric Rasche 4b64a70906 Added remote_host variable to docker conf

In order to whitelist IPs allowed to connect to notebooks, we need to know who the remote target
connecting is. We can blacklist on IP address only, as we have no way of authenticating them. While
we do have access to other information like cookies, we have no SSL nor way to know what
authentication method the galaxy server will be using.

2014-10-18 18:38:03 -04:00

charts

ToolForm: Parses dynamic options and rerun states to tool model

2014-10-14 17:57:01 -04:00

circster/config

Vis registry: add two tests (has_attribute, not_eq); add see also for test types in visualization.dtd; correct applicability tests for trackster and circster using not_eq on datatype.track_type

2014-08-28 09:44:56 -04:00

common/templates

Charts to_json_string/dumps swap.

2014-09-08 17:11:18 -04:00

graphview

Plugin framework: factor out page serving responsibility, add HookPluginManager subclass and PageServingPluginManager subclass; Visualization registry: inherit from PageServingPluginManager

2013-09-18 10:53:12 -04:00

ipython

Added remote_host variable to docker conf

2014-10-18 18:38:03 -04:00

phyloviz/config

Visualization framework: remove deprecated 'template_root' element left from when visualizations were loaded from galaxy's template directory

2014-04-23 11:59:21 -04:00

scatterplot

Charts to_json_string/dumps swap.

2014-09-08 17:11:18 -04:00

sweepster/config

Visualization framework: remove deprecated 'template_root' element left from when visualizations were loaded from galaxy's template directory

2014-04-23 11:59:21 -04:00

trackster/config

Vis registry: add two tests (has_attribute, not_eq); add see also for test types in visualization.dtd; correct applicability tests for trackster and circster using not_eq on datatype.track_type

2014-08-28 09:44:56 -04:00

additional_template_paths.xml

PageServingPluginManager: allow additional common paths to be added to each plugin's TemplateLookup and allow configuration of these paths; Visualizations Framework: add common/templates, readme, and configuration of same

2014-02-05 11:55:13 -05:00

README.txt

Rename universe_wsgi.ini -> galaxy.ini everywhere.

2014-09-15 16:43:51 -04:00

visualization.dtd

Vis registry: add two tests (has_attribute, not_eq); add see also for test types in visualization.dtd; correct applicability tests for trackster and circster using not_eq on datatype.track_type

2014-08-28 09:44:56 -04:00

README.txt

Custom visualization plugins
----------------------------

Visualizations can be added to your Galaxy instance by creating
sub-directories, templates, and static files here.

Properly configured and written visualizations will be accessible to
the user when they click the 'visualizations' icon for a dataset
in their history panel.

The framework must be enabled in your 'galaxy.ini' file by uncommenting (and
having a valid path for) the 'visualizations_plugin_directory' entry.

For more information, see http://wiki.galaxyproject.org/VisualizationsRegistry


Sub-directory structure
-----------------------

In general, sub-directories should follow the pattern:

    my_visualization/
        config/
            my_visualization.xml
        static/
            ... any static files the visualization needs (if any)
        templates/
            ... any Mako templates the visualization needs

The XML config file for a visualization plugin can be validated on the command
line using (from your plugin directory):

    xmllint my_visualization/config/my_visualization.xml --valid --noout