mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
42 lines
2.4 KiB
XML
42 lines
2.4 KiB
XML
<?xml version="1.0"?>
|
|
<!--
|
|
If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
|
|
the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
|
|
initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
|
|
-->
|
|
<tool name="BX" id="bx_browser" tool_type="data_source">
|
|
<description>table browser</description>
|
|
<command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
|
|
<inputs action="http://main.genome-browser.bx.psu.edu/cgi-bin/hgTables" check_values="false" method="get">
|
|
<display>go to BX Browser $GALAXY_URL</display>
|
|
<param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
|
|
<param name="tool_id" type="hidden" value="bx_browser" />
|
|
<param name="sendToGalaxy" type="hidden" value="1" />
|
|
<param name="hgta_compressType" type="hidden" value="none" />
|
|
<param name="hgta_outputType" type="hidden" value="bed" />
|
|
</inputs>
|
|
<request_param_translation>
|
|
<request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
|
|
<request_param galaxy_name="URL" remote_name="URL" missing="" />
|
|
<request_param galaxy_name="dbkey" remote_name="db" missing="?" />
|
|
<request_param galaxy_name="organism" remote_name="org" missing="unknown species" />
|
|
<request_param galaxy_name="table" remote_name="hgta_table" missing="unknown table" />
|
|
<request_param galaxy_name="description" remote_name="hgta_regionType" missing="no description" />
|
|
<request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="tabular" >
|
|
<value_translation>
|
|
<value galaxy_value="tabular" remote_value="primaryTable" />
|
|
<value galaxy_value="tabular" remote_value="selectedFields" />
|
|
<value galaxy_value="wig" remote_value="wigData" />
|
|
<value galaxy_value="interval" remote_value="tab" />
|
|
<value galaxy_value="html" remote_value="hyperlinks" />
|
|
<value galaxy_value="fasta" remote_value="sequence" />
|
|
</value_translation>
|
|
</request_param>
|
|
</request_param_translation>
|
|
<uihints minwidth="800"/>
|
|
<outputs>
|
|
<data name="output" format="tabular" />
|
|
</outputs>
|
|
<options sanitize="False" refresh="True"/>
|
|
</tool>
|