Files
galaxy/tools/emboss/emboss_single_outputfile_wrapper.pl
T

28 lines
592 B
Perl

#! /usr/bin/perl -w
use strict;
use File::Copy;
my $cmd_string = join (" ",@ARGV);
my $results = `$cmd_string`;
my @files = split("\n",$results);
my $fileNameOut = $ARGV[6];
my ($drive, $outputDir, $file) = File::Spec->splitpath( $fileNameOut );
my $destination = $fileNameOut;
foreach my $thisLine (@files)
{
if ($thisLine =~ /Created /)
{
$thisLine =~ /[\w|\.]+$/;
$thisLine =$&;
#print "outfile: $thisLine\n";
#there is only one file to move, so we can quit after finding it
move($drive.$outputDir.$thisLine,$fileNameOut);
exit(1);
}
else
{
print $thisLine,"\n";
}
}