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45 lines
1.9 KiB
XML
45 lines
1.9 KiB
XML
<tool id="EMBOSS: sigcleave88" name="sigcleave">
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<description>Reports protein signal cleavage sites</description>
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<command>sigcleave -sequence $input1 -outfile $out_file1 -minweight "$minweight" -prokaryote $prokaryote -rformat2 $out_format1 -auto</command>
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<inputs>
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<param format="data" name="input1" type="data">
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<label>Sequences</label>
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</param>
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<param name="minweight" size="4" type="text" value="3.5">
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<label>Minimum scoring weight value for the predicted cleavage site</label>
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</param>
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<param name="prokaryote" type="select">
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<label>Specifies the sequence is prokaryotic and changes the default scoring data file</label>
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<option value="no">No</option>
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<option value="yes">Yes</option>
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</param>
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<param name="out_format1" type="select">
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<label>Output Report File Format</label>
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<option value="motif">Motif</option>
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<option value="embl">EMBL</option>
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<option value="genbank">GENBANK</option>
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<option value="gff">GFF</option>
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<option value="pir">PIR</option>
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<option value="swiss">SwissProt</option>
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<option value="dbmotif">DbMotif</option>
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<option value="diffseq">Diffseq</option>
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<option value="excel">Excel (tab delimited)</option>
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<option value="feattable">FeatTable</option>
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<option value="regions">Regions</option>
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<option value="seqtable">SeqTable</option>
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<option value="simple">SRS Simple</option>
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<option value="srs">SRS</option>
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<option value="table">Table</option>
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<option value="tagseq">TagSeq</option>
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</param>
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</inputs>
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<outputs>
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<data format="motif" name="out_file1" />
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</outputs>
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<code file="emboss_format_corrector.py" />
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<help>
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You can view the original documentation here_.
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.. _here: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/sigcleave.html
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</help>
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</tool> |