Nate Coraor e05f11bc73 Convert a bunch of binary requirement tags to package requirements, and change the sputnik tool to call 'sputnik' instead of 'bx-sputnik'.

2010-10-07 16:23:57 -04:00

..

blat_coverage_report.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

blat_coverage_report.xml

update rmap and rmapq tool wrappers.

2008-04-22 21:04:24 +00:00

blat_mapping.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

blat_mapping.xml

update rmap and rmapq tool wrappers.

2008-04-22 21:04:24 +00:00

blat_wrapper.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

blat_wrapper.xml

Upgrade to Cheetah 2.2.2

2009-11-10 13:47:34 -05:00

convert_SOLiD_color2nuc.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

convert_SOLiD_color2nuc.xml

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

fastqsolexa_to_fasta_qual.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

fastqsolexa_to_fasta_qual.xml

Replacing \"qual\" datatype with 3 new datatypes: qualsolid, qual454 and qualsolexa.

2009-04-29 11:53:22 -04:00

mapping_to_ucsc.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

mapping_to_ucsc.xml

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

megablast_wrapper.py

Updated NGS tools' stderr handling to use file rather than pipe to allow for large stderr output

2010-04-12 15:56:13 -04:00

megablast_wrapper.xml

Convert a bunch of binary requirement tags to package requirements, and change the sputnik tool to call 'sputnik' instead of 'bx-sputnik'.

2010-10-07 16:23:57 -04:00

megablast_xml_parser.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

megablast_xml_parser.xml

Remove obsolete binseq.zip and txtseq.zip formats, and allow for uploading single files in a zip archive. Adapted from a patch from Pablo Cingolani.

2010-06-23 16:48:13 -04:00

rmap_wrapper.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

rmap_wrapper.xml

Fix locations of cached data for tests

2010-02-25 12:27:07 -05:00

rmapq_wrapper.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

rmapq_wrapper.xml

Fix locations of cached data for tests

2010-02-25 12:27:07 -05:00

short_reads_figure_high_quality_length.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

short_reads_figure_high_quality_length.xml

typo fixes for tools in folders A-M

2009-09-27 23:11:43 -04:00

short_reads_figure_score.py

Remove obsolete binseq.zip and txtseq.zip formats, and allow for uploading single files in a zip archive. Adapted from a patch from Pablo Cingolani.

2010-06-23 16:48:13 -04:00

short_reads_figure_score.xml

Remove obsolete binseq.zip and txtseq.zip formats, and allow for uploading single files in a zip archive. Adapted from a patch from Pablo Cingolani.

2010-06-23 16:48:13 -04:00

short_reads_trim_seq.py

Remove obsolete binseq.zip and txtseq.zip formats, and allow for uploading single files in a zip archive. Adapted from a patch from Pablo Cingolani.

2010-06-23 16:48:13 -04:00

short_reads_trim_seq.xml

Remove obsolete binseq.zip and txtseq.zip formats, and allow for uploading single files in a zip archive. Adapted from a patch from Pablo Cingolani.

2010-06-23 16:48:13 -04:00

shrimp_color_wrapper.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

shrimp_color_wrapper.xml

Upgrade to Cheetah 2.2.2

2009-11-10 13:47:34 -05:00

shrimp_wrapper.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

shrimp_wrapper.xml

Upgrade to Cheetah 2.2.2

2009-11-10 13:47:34 -05:00

split_paired_reads.py

Sync hashbangs

2010-04-01 20:36:31 -04:00

split_paired_reads.xml

Add a new FASTQ tool suite. Four FASTQ variants are supported: sanger, illumina, solexa and solid.

2010-02-23 16:48:07 -05:00