mvdbeek 4225e4b0fa Merge branch 'release_24.2' into release_25.0

2025-08-29 19:59:33 +02:00

..

__init__.py

Rev mypy.

2021-04-23 14:49:53 -04:00

access_libraries.xml

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

biomart_test.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

biomart.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

cbi_rice_mart.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

data_source.py

Include galaxy user agent in data source tools

2025-08-29 17:22:28 +02:00

diced.xml

tool xml fixed

2025-03-18 21:47:57 -04:00

ebi_sra.xml

Update ENA url in ebi_sra tool

2024-09-04 12:29:31 +02:00

eupathdb.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

fly_modencode.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

flymine_test.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

flymine.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

genbank.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

genbank.xml

Add EDAM topics to unannotated tools

2020-10-30 17:59:45 +01:00

gramene_mart.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

hapmapmart.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

hbvar.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

import.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

import.xml

Add EDAM topics to unannotated tools

2020-10-30 17:59:45 +01:00

intermine.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

metabolicmine.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

microbial_import_code.py

Replace file_name property with get_file_name function

2023-11-08 17:17:14 -05:00

microbial_import.py

Apply black to tools as well

2022-02-03 09:12:13 -05:00

microbial_import.xml

Add EDAM topics to unannotated tools

2020-10-30 17:59:45 +01:00

modmine.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

mousemine.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

ncbi_datasets.xml

Add @TOOL_VERSION@ token for NCBI Datasets Genomes

2022-05-04 16:34:09 +02:00

ratmine.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

sra.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

ucsc_tablebrowser_archaea.xml

Adjust UCSC Table browser tools to code changes

2024-02-22 17:29:33 +01:00

ucsc_tablebrowser_test.xml

Adjust UCSC Table browser tools to code changes

2024-02-22 17:29:33 +01:00

ucsc_tablebrowser.xml

Adjust UCSC Table browser tools to code changes

2024-02-22 17:29:33 +01:00

upload.py

Make CompressedFile a context manager

2025-01-18 14:40:30 +00:00

upload.xml

Implement group tag testing in tools.

2024-08-09 11:54:19 -04:00

worm_modencode.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

wormbase_test.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

wormbase.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

yeastmine.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00

zebrafishmine.xml

Switch data_source.py to modern tool-provided metadata

2024-02-08 16:43:39 +01:00