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John Chilton
751f91f878
- Replace --skip-successful with two new mutually exclusive options --skip-previously-successful and --skip-previously-executed. - Enhance argparse usage for mutual exclusivity of history options also. - I noticed in some tests of collection operation tools I will sometimes get the ToolInputNotReady problems - I refactored this to be a MessageException with a specific error code that can be checked and retried later by the client. - Allow the client to specify test-data directories to check against - many of the bundled tools depend on https://github.com/galaxyproject/galaxy-test-data for instance but production instances will not have this available. - Improve log message when writing outputs to standard output. - Some older toolshed tools rely on Galaxy's bundled test data - so when generated paths to test-data check this also even if a repository directory is found. - Refactor the entry point to allow passing in tool filters - I want to develop a downstream script that will test all the tools of a workflow.