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https://github.com/galaxyproject/galaxy.git
synced 2026-10-24 12:13:33 +08:00
John Chilton
c791fea0cf
- Create a new project galaxy-files that does not depend on anything but galaxy-util. - Add a dependency in galaxy-data on galaxy-files, use typing in galaxy.data.sniff to make this clear. - Cleanup the galaxy-files unit tests to not depend on galaxy.datatypes.sniff code - this wasn't ideal to start with. - Add a small integration-ish unit test test_sniff_file_sources.py to test that piece of sniff.py that depends on galaxy-files.
37 lines
1.1 KiB
Python
37 lines
1.1 KiB
Python
import os
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from galaxy.datatypes import sniff
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from galaxy.files import ConfiguredFileSourcesConfig
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from galaxy.files.unittest_utils import setup_root, TestConfiguredFileSources, write_file_fixtures
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def test_posix():
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file_sources = _configured_file_sources()
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as_dict = file_sources.to_dict()
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assert len(as_dict["file_sources"]) == 1
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file_source_as_dict = as_dict["file_sources"][0]
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assert file_source_as_dict["uri_root"] == "gxfiles://test1"
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_download_and_check_file(file_sources)
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def _download_and_check_file(file_sources):
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tmp_name = sniff.stream_url_to_file("gxfiles://test1/a", file_sources=file_sources)
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try:
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a_contents = open(tmp_name).read()
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assert a_contents == "a\n"
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finally:
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os.remove(tmp_name)
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def _configured_file_sources() -> TestConfiguredFileSources:
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tmp, root = setup_root()
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file_sources_config = ConfiguredFileSourcesConfig()
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plugin = {
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'type': 'posix',
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}
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plugin['root'] = root
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write_file_fixtures(tmp, root)
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file_sources = TestConfiguredFileSources(file_sources_config, conf_dict={"test1": plugin}, test_root=root)
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return file_sources
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