John Chilton 3c47105732 Fix shed tool test file shed_tools_dict handling. ...

Instead of writing it below GALAXY_ROOT (which it shouldn't do at all) - add to the temp directory managed for the test so that special clean up logic isn't required for it. The global switch GALAXY_TEST_NO_CLEANUP can be used to recover the state of this file if needed now also.

2016-03-29 08:04:25 -04:00

..

api

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

auth

Clean up pam auth helper.

2015-07-17 08:06:04 -04:00

cleanup_datasets

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

data_libraries

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

loc_files

Fix the remaining 1334 flake8 errors in scripts/ . Close #391.

2016-02-18 15:45:15 +00:00

metagenomics

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

microbes

Fix the remaining 1334 flake8 errors in scripts/ . Close #391.

2016-02-18 15:45:15 +00:00

migrate_tools

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

others

Fix the remaining 1334 flake8 errors in scripts/ . Close #391.

2016-02-18 15:45:15 +00:00

taxonomy

Tweaks to taxonomy tools

2010-11-15 15:04:59 -05:00

tool_shed

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

tools

Fix the remaining 1334 flake8 errors in scripts/ . Close #391.

2016-02-18 15:45:15 +00:00

__init__.py

Adding db_shell.py that can be used to simplify writing command line

2012-03-05 12:11:53 -06:00

binary_compatibility.py

Add the scientific platform (Scientific Linux) as binary compatible

2016-02-03 13:33:42 -05:00

bootstrap_history_announce_template.rst

Fixup end of release items for release notes.

2015-08-27 13:04:17 +01:00

bootstrap_history.py

Work toward automating deployment.

2016-03-16 15:02:02 +00:00

build_toolbox.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

build_universe_config.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

check_eggs.py

Add stub fetch_eggs.py/check_eggs.py for people whose build/test/run

2015-11-06 11:06:11 -05:00

check_galaxy.py

Fix the remaining 1334 flake8 errors in scripts/ . Close #391.

2016-02-18 15:45:15 +00:00

check_python.py

Update check_python.py now dropping Python 2.6

2016-03-07 15:50:05 +00:00

common_startup.sh

Always use the python hashlib for verifying the virtualenv download in

2016-02-03 13:16:27 -05:00

create_db.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

db_shell.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

drmaa_external_killer.py

Remove egg cruft from scripts/

2015-09-21 15:55:07 -04:00

drmaa_external_runner.py

Remove egg cruft from scripts/

2015-09-21 15:55:07 -04:00

edam_mapping.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

external_chown_script.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

extract_dataset_part.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

extract_toolbox_sections.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

fetch_eggs.py

Add stub fetch_eggs.py/check_eggs.py for people whose build/test/run

2015-11-06 11:06:11 -05:00

functional_tests.py

Fix shed tool test file shed_tools_dict handling.

2016-03-29 08:04:25 -04:00

galaxy-main

Fix the remaining 1334 flake8 errors in scripts/ . Close #391.

2016-02-18 15:45:15 +00:00

get_platforms.py

Fix the remaining 1334 flake8 errors in scripts/ . Close #391.

2016-02-18 15:45:15 +00:00

helper.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

manage_db.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

manage_tools.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

nosetests.py

Fix additional lint errors created by modifying stuff in scripts/

2015-09-21 16:01:22 -04:00

paster.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

patch.sh

Add the script I used to create security patches

2016-02-24 16:54:30 -05:00

rst2html.py

Cleaning up modules. Still a few stragglers that can't be easily eggified.

2006-11-15 18:27:21 +00:00

run_selenium_tests.sh

Adding workflow tests using Selenium. These actually drive the web browser to test the Javascript UI effectively. Currently can't run under buildbot.

2009-03-27 18:55:00 -04:00

runtime_stats.py

Partially lint scripts/ .

2015-07-13 20:13:28 +01:00

set_dataset_sizes.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

set_user_disk_usage.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00

summarize_timings.py

Improvements to workflow scaling performance testing scripts.

2016-03-21 01:39:45 +00:00

sync_reports_config.py

Changed reports_wsgi.ini to reports.ini

2015-11-27 23:50:46 +05:30

transfer.py

Do not import dumps and loads from galaxy.util.json .

2016-03-02 19:04:24 +00:00

update_shed_config_path.py

Use __file__ when adding paths to sys.path instead of os.getcwd() .

2016-02-18 15:45:15 +00:00