Greg Von Kuster de1ea7ae0a Eliminate the use of the genetrack controller, merge the template code for uploading library datasets, and several bug fixes: ...

- The genetrack controller is no longer used ( I'll delete it soon ), so the GeneTrack application is now loosely coupled
- Merge the 2 new_dataset.mako templates into one common code module name library_dataset_common.mako
- Rename all of the library upload form fields to have the same names as the history upload form fields
- Eliminate a 2nd runtool_btn from being rendered on the same form in tool_form.mako
- Fix bug and add functional tests to cover uploading a library dataset that does not include a template

2009-09-22 14:04:48 -04:00

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shared

Eliminate the use of the genetrack controller, merge the template code for uploading library datasets, and several bug fixes:

2009-09-22 14:04:48 -04:00

alignseq.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

annotation_profiler_options.xml.sample

Adding a new parameter type drill_down. This parameter type creates a hierarchical set of checkboxes or radiobuttons.

2008-05-07 17:10:35 +00:00

annotation_profiler_valid_builds.txt.sample

Adding a new parameter type drill_down. This parameter type creates a hierarchical set of checkboxes or radiobuttons.

2008-05-07 17:10:35 +00:00

binned_scores.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

blastdb.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

bowtie_indices.loc.sample

Added Bowtie wrapper tool

2009-09-11 14:38:05 -04:00

encode_datasets.loc.sample

Commenting data lines in .loc.sample tool-data files so tools will not throw exceptions.

2008-04-03 14:31:16 +00:00

faseq.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

fastx_clipper_sequences.txt

Updating FASTX tool-set to the latest version v0.0.10

2009-09-14 17:03:17 -04:00

liftOver.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

maf_index.loc.sample

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

maf_pairwise.loc.sample

Rewrite of dynamic options for select lists. There are no more 'special cases' and new filters are much easier to incorporate, as neeeded.

2008-05-29 17:38:46 +00:00

microbial_data.loc.sample

Commenting data lines in .loc.sample tool-data files so tools will not throw exceptions.

2008-04-03 14:31:16 +00:00

phastOdds.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

quality_scores.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

regions.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00

sam_fa_indices.loc.sample

Added samtools-based tools (sam_to_bam, sam_merge, sam_pileup) with their supporting files and modified Bam datatype so temp files are properly cleaned up

2009-08-28 15:59:16 -04:00

sequence_index_base.loc.sample

Added BWA wrapper tool to Short Read Mapping Tools

2009-07-24 15:13:11 -04:00

sequence_index_color.loc.sample

Added BWA wrapper tool to Short Read Mapping Tools

2009-07-24 15:13:11 -04:00

twobit.loc.sample

Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.

2008-06-30 18:02:53 +00:00