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..

__init__.py

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genebed_maf_to_fasta.xml

Update maf tools with profiles, required_files, and requirements.

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interval2maf_pairwise.xml

Update maf tools with profiles, required_files, and requirements.

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interval2maf.py

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interval2maf.xml

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interval_maf_to_merged_fasta.py

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interval_maf_to_merged_fasta.xml

Update maf tools with profiles, required_files, and requirements.

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macros.xml

Update maf tools with profiles, required_files, and requirements.

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maf_by_block_number.py

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maf_by_block_number.xml

Update maf tools with profiles, required_files, and requirements.

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maf_filter.py

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maf_filter.xml

Add separate out file for MAF_Limit_To_Species1 test

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maf_limit_size.py

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maf_limit_size.xml

Update maf tools with profiles, required_files, and requirements.

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maf_limit_to_species.py

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maf_limit_to_species.xml

Update maf tools with profiles, required_files, and requirements.

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maf_reverse_complement.py

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maf_reverse_complement.xml

Update maf tools with profiles, required_files, and requirements.

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maf_split_by_species.py

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maf_split_by_species.xml

Update maf tools with profiles, required_files, and requirements.

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maf_stats.py

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maf_stats.xml

Update maf tools with profiles, required_files, and requirements.

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maf_thread_for_species.py

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maf_thread_for_species.xml

Update maf tools with profiles, required_files, and requirements.

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maf_to_bed_code.py

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maf_to_bed.py

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maf_to_bed.xml

Update maf tools with profiles, required_files, and requirements.

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maf_to_fasta_concat.py

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maf_to_fasta_multiple_sets.py

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maf_to_fasta.xml

Update maf tools with profiles, required_files, and requirements.

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maf_to_interval.py

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maf_to_interval.xml

Update maf tools with profiles, required_files, and requirements.

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vcf_to_maf_customtrack.py

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vcf_to_maf_customtrack.xml

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