Daniel Blankenberg 39ff0e9d76 Merge pull request #1044 from jmchilton/release_15.10_to_dev ...

Bring 15.10 (and 15.07) fixes into dev.

2015-11-10 10:42:02 -05:00

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data_source

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

evolution

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

extract

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

filters

Merge pull request #1033 from scholtalbers/wig_to_bigwig_error_msg

2015-11-05 18:37:35 +00:00

genomespace

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

maf

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

meme

Specify meme requirement for fimo tool.

2012-02-02 21:29:30 -06:00

metag_tools

Migrate 22 tools from the distribution to the tool shed.

2014-05-19 13:01:46 -04:00

next_gen_conversion

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

ngs_simulation

Remove remaining references to galaxy.eggs . flake8 some files in tools/ .

2015-10-26 19:29:13 +00:00

phenotype_association

Fix all E712 errors. Standardize sqlalchemy imports.

2015-07-14 20:49:34 +01:00

plotting

Use requirements of type="package" instead of deprecated "binary".

2015-05-15 12:43:15 +01:00

solid_tools

dos2unix of tools/ directory. Some whitespace and PEP-8 fixes.

2015-05-15 12:40:52 +01:00

sr_assembly

Use from_work_dir instead of copying output files line by line. Write velvetg output to stdout.

2014-10-28 18:45:17 +01:00

sr_mapping

Add more distribution tool citations.

2015-10-05 15:16:50 +01:00

stats

Lint fix for 15.10 to dev merge.

2015-11-09 15:33:05 +00:00

validation

Make tool version explicit (Job runner would assume 1.0.0)

2015-03-09 15:21:48 +00:00

visualization

Add citations to a few more tools.

2015-10-05 15:12:46 +01:00