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John Chilton
e77b88f6f3
- Allow import and export collections. - Fix job I/O for separated tool and job script streams (merged in #7095 during 19.05) - Fix job state handling so that all imported jobs have terminal state. - Fixes to eliminate HID handling for associations (objects were previously tracked by HID but inputs/outputs in history may not be in history - so HID is not at all appropriate, problem was amplified by collections). - Fix job output mapping - was using the HDA name instead of job output name during import (old exports don't have this info - only new ones do). - Fixes assigning HIDs to datasets during import and fixes to hid_counter - in many ways this was very broken for imported histories. - Introduce cohesive model object import/export abstractions including a lot of new, well tested functionality. - Allow import/export of datasets and collections stand-alone regardless of history. - Allow export and re-import of datasets and collections (so for instance datasets can be created for a job and read in at the end of a job and merged back into the database). This is needed for extended metadata collection. - Separate implementation for import abstraction that allow import of legacy archives without complicating logic for current archive format. - Implementation of import and export abstraction for [BagIt](https://datatracker.ietf.org/doc/rfc8493/) using [bdbag](https://github.com/fair-research/bdbag). - Context manager support and clean APIs for all of this including import and export of directories, archives, and bags. - A lot more unit testing.