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40 lines
2.8 KiB
Plaintext
40 lines
2.8 KiB
Plaintext
#This is a sample file distributed with Galaxy that is used by the
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#liftOver tools. The liftOver.loc file has this format (white space
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#characters are TAB characters):
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#
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#<FromSpecies> <ToSpecies> <PathToChainFile>
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#anoCar1 galGal3 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain
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#anoCar1 gasAcu1 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGasAcu1.over.chain
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#anoCar1 hg18 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToHg18.over.chain
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#anoCar1 mm8 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToMm8.over.chain
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#anoCar1 mm9 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToMm9.over.chain
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#anoCar1 ornAna1 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToOrnAna1.over.chain
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#anoCar1 xenTro2 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToXenTro2.over.chain
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#anoGam1 dm2 /depot/data2/galaxy/anoGam1/liftOver/anoGam1ToDm2.over.chain
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#anoGam1 dm3 /depot/data2/galaxy/anoGam1/liftOver/anoGam1ToDm3.over.chain
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#apiMel1 dm2 /depot/data2/galaxy/apiMel1/liftOver/apiMel1ToDm2.over.chain
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#apiMel2 dm2 /depot/data2/galaxy/apiMel2/liftOver/apiMel2ToDm2.over.chain
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#bosTau2 bosTau3 /depot/data2/galaxy/bosTau2/liftOver/bosTau2ToBosTau3.over.chain
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#bosTau2 hg17 /depot/data2/galaxy/bosTau2/liftOver/bosTau2ToHg17.over.chain
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#bosTau2 hg18 /depot/data2/galaxy/bosTau2/liftOver/bosTau2ToHg18.over.chain
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#bosTau2 mm7 /depot/data2/galaxy/bosTau2/liftOver/bosTau2ToMm7.over.chain
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#bosTau2 mm8 /depot/data2/galaxy/bosTau2/liftOver/bosTau2ToMm8.over.chain
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#bosTau2 rn4 /depot/data2/galaxy/bosTau2/liftOver/bosTau2ToRn4.over.chain
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#canFam1 canFam2 /depot/data2/galaxy/canFam1/liftOver/canFam1ToCanFam2.over.chain
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#canFam1 hg17 /depot/data2/galaxy/canFam1/liftOver/canFam1ToHg17.over.chain
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#canFam1 mm5 /depot/data2/galaxy/canFam1/liftOver/canFam1ToMm5.over.chain
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#canFam1 mm6 /depot/data2/galaxy/canFam1/liftOver/canFam1ToMm6.over.chain
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#canFam2 equCab1 /depot/data2/galaxy/canFam2/liftOver/canFam2ToEquCab1.over.chain
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#canFam2 hg17 /depot/data2/galaxy/canFam2/liftOver/canFam2ToHg17.over.chain
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#canFam2 hg18 /depot/data2/galaxy/canFam2/liftOver/canFam2ToHg18.over.chain
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#canFam2 mm6 /depot/data2/galaxy/canFam2/liftOver/canFam2ToMm6.over.chain
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#canFam2 mm7 /depot/data2/galaxy/canFam2/liftOver/canFam2ToMm7.over.chain
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#canFam2 mm8 /depot/data2/galaxy/canFam2/liftOver/canFam2ToMm8.over.chain
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#canFam2 mm9 /depot/data2/galaxy/canFam2/liftOver/canFam2ToMm9.over.chain
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#canFam2 rn3 /depot/data2/galaxy/canFam2/liftOver/canFam2ToRn3.over.chain
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#canFam2 rn4 /depot/data2/galaxy/canFam2/liftOver/canFam2ToRn4.over.chain
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#ce2 ce4 /depot/data2/galaxy/ce2/liftOver/ce2ToCe4.over.chain
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#ce4 caePb1 /depot/data2/galaxy/ce4/liftOver/ce4ToCaePb1.over.chain
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#ce4 caeRem2 /depot/data2/galaxy/ce4/liftOver/ce4ToCaeRem2.over.chain
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#ce4 cb3 /depot/data2/galaxy/ce4/liftOver/ce4ToCb3.over.chain
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#ce4 priPac1 /depot/data2/galaxy/ce4/liftOver/ce4ToPriPac1.over.chain |