mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
John Chilton
939e7774a8
This is (so far a subset of) the tool utilities from galaxy-lib. galaxy-lib mocked out a fake galaxy.tools to allow these to all exist below the galaxy.tools - but this was a terrible hack - in order for the new packages to be true subsets of Galaxy they need to be refactored into a new package that doesn't depend on models, SA, galaxy.jobs, etc... [x] galaxy.tools.deps -> galaxy.tool_util.deps [x] galaxy.tools.loader -> galaxy.tool_util.loader [x] galaxy.tools.cwl -> galaxy.tool_util.cwl [x] galaxy.tools.loader -> galaxy.tool_util.loader [x] galaxy.tools.fetcher -> galaxy.tool_util.fetcher [x] galaxy.tools.locations -> galaxy.tool_util.locations [x] galaxy.tools.parser -> galaxy.tool_util.parser
46 lines
1.6 KiB
Python
46 lines
1.6 KiB
Python
from galaxy.model import tool_shed_install
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from galaxy.tool_util.deps import (
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dependencies,
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requirements
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)
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def test_serialization():
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repository = tool_shed_install.ToolShedRepository(
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owner="devteam",
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name="tophat",
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installed_changeset_revision="abcdefghijk",
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)
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dependency = tool_shed_install.ToolDependency(
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name="tophat",
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version="2.0",
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type="package",
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status=tool_shed_install.ToolDependency.installation_status.INSTALLED,
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)
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dependency.tool_shed_repository = repository
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tool_requirement = requirements.ToolRequirement(
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name="tophat",
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version="2.0",
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type="package",
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)
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descript = dependencies.DependenciesDescription(
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requirements=[tool_requirement],
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installed_tool_dependencies=[dependency],
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)
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result_descript = dependencies.DependenciesDescription.from_dict(
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descript.to_dict()
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)
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result_requirement = result_descript.requirements[0]
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assert result_requirement.name == "tophat"
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assert result_requirement.version == "2.0"
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assert result_requirement.type == "package"
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result_tool_shed_dependency = list(result_descript.installed_tool_dependencies)[0]
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result_tool_shed_dependency.name = "tophat"
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result_tool_shed_dependency.version = "2.0"
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result_tool_shed_dependency.type = "package"
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result_tool_shed_repository = result_tool_shed_dependency.tool_shed_repository
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result_tool_shed_repository.name = "tophat"
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result_tool_shed_repository.owner = "devteam"
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result_tool_shed_repository.installed_changeset_revision = "abcdefghijk"
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