mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Nicola Soranzo
6e01d465c4
Introduced in commit cb9fc095fc but
never documented, tested or used in any known tool.
43 lines
1.4 KiB
Python
43 lines
1.4 KiB
Python
from galaxy.managers.citations import (
|
|
BibtexCitation,
|
|
CitationCollection,
|
|
parse_citation,
|
|
)
|
|
from galaxy.util import parse_xml_string
|
|
|
|
EXAMPLE_BIBTEX_CITATION = """<citation type="bibtex">@article{goecks2010galaxy,
|
|
title={Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences},
|
|
author={Goecks, Jeremy and Nekrutenko, Anton and Taylor, James and The Galaxy Team},
|
|
journal={Genome Biol},
|
|
volume={11},
|
|
number={8},
|
|
pages={R86},
|
|
year={2010}
|
|
}</citation>"""
|
|
|
|
|
|
def test_parse_citation():
|
|
xml_text = EXAMPLE_BIBTEX_CITATION
|
|
citation_elem = parse_xml_string(xml_text)
|
|
citation = parse_citation(citation_elem, None)
|
|
bibtex = citation.to_bibtex()
|
|
assert "title={Galaxy" in bibtex
|
|
|
|
|
|
def test_citation_collection():
|
|
citation_collection = CitationCollection()
|
|
assert len(citation_collection) == 0
|
|
cite1 = QuickBibtexCitation("@article{'test1'}")
|
|
cite1dup = QuickBibtexCitation("@article{'test1'}")
|
|
cite2 = QuickBibtexCitation("@article{'test2'}")
|
|
assert citation_collection.add(cite1)
|
|
assert not citation_collection.add(cite1dup)
|
|
assert citation_collection.add(cite2)
|
|
assert len(citation_collection) == 2
|
|
|
|
|
|
class QuickBibtexCitation(BibtexCitation):
|
|
|
|
def __init__(self, raw_bibtex):
|
|
self.raw_bibtex = raw_bibtex
|