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22 lines
847 B
XML
22 lines
847 B
XML
<tool id="metadata_bcf" name="metadata_BCF" version="1.0.0">
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<requirements>
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<requirement type="package" version="5.39">file</requirement>
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</requirements>
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<command><![CDATA[
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file '${input_bcf.metadata.bcf_index}' > '${output_of_input_metadata}'
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]]></command>
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<inputs>
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<param name="input_bcf" type="data" format="bcf" label="BCF File"/>
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</inputs>
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<outputs>
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<data name="output_of_input_metadata" format="txt" />
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</outputs>
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<tests>
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<test>
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<param name="input_bcf" value="bcf_index_metadata_test.bcf" ftype="bcf" />
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<!-- Tests whether the .bcf.csi file is of "gzip compressed data, extra field" type -->
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<output name="output_of_input_metadata" ftype="txt" file="bcf_index_metadata_test.txt" compare="contains"/>
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</test>
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</tests>
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</tool>
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