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35 lines
1.5 KiB
XML
35 lines
1.5 KiB
XML
<tool id="metadata" name="metadata" version="1.0.0">
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<command><![CDATA[
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mkdir '$output_copy_of_input.extra_files_path' &&
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cp '$input.extra_files_path'/* '$output_copy_of_input.extra_files_path' &&
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echo '$input.metadata.base_name' > '$output_of_input_metadata'
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]]></command>
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<inputs>
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<param name="input" type="data" format="velvet" label="Velvet Dataset" help="Prepared by velveth."/>
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</inputs>
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<outputs>
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<data name="output_of_input_metadata" format="txt" />
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<data name="output_copy_of_input" format="velvet" />
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</outputs>
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<tests>
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<test>
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<param name="input" value="velveth_test1/output.html" ftype="velvet" >
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<composite_data value="velveth_test1/Sequences" />
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<composite_data value="velveth_test1/Roadmaps" />
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<composite_data value="velveth_test1/Log"/>
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<metadata name="base_name" value="Example Metadata" />
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</param>
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<!-- This ouptut tests setting input metadata above -->
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<output name="output_of_input_metadata" ftype="txt">
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<assert_contents>
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<has_line line="Example Metadata" />
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</assert_contents>
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</output>
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<!-- This output tests an assertion about output metadata -->
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<output name="output_copy_of_input" file="velveth_test1/output.html">
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<metadata name="base_name" value="velvet" />
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</output>
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</test>
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</tests>
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</tool>
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