mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-24 16:30:27 +08:00
Nicola Soranzo
9d74bba7fb
Upgrade syntax using `pyupgrade --py36-plus` . Manually drop several `six` imports. Also: - Remove broken pr_cache in scripts/bootstrap_history.py - Fix broken prefix removal in lib/galaxy/tool_util/deps/mulled/mulled_build.py
127 lines
3.9 KiB
Python
127 lines
3.9 KiB
Python
#!/usr/bin/env python
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import ast
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import os
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import re
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try:
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from setuptools import setup
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except ImportError:
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from distutils.core import setup
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SOURCE_DIR = "galaxy"
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_version_re = re.compile(r'__version__\s+=\s+(.*)')
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with open('%s/project_galaxy_tool_util.py' % SOURCE_DIR, 'rb') as f:
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init_contents = f.read().decode('utf-8')
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def get_var(var_name):
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pattern = re.compile(r'%s\s+=\s+(.*)' % var_name)
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match = pattern.search(init_contents).group(1)
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return str(ast.literal_eval(match))
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version = get_var("__version__")
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PROJECT_NAME = get_var("PROJECT_NAME")
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PROJECT_URL = get_var("PROJECT_URL")
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PROJECT_AUTHOR = get_var("PROJECT_AUTHOR")
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PROJECT_EMAIL = get_var("PROJECT_EMAIL")
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PROJECT_DESCRIPTION = get_var("PROJECT_DESCRIPTION")
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TEST_DIR = 'tests'
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PACKAGES = [
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'galaxy',
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'galaxy.tool_util',
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'galaxy.tool_util.client',
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'galaxy.tool_util.cwl',
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'galaxy.tool_util.deps',
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'galaxy.tool_util.deps.container_resolvers',
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'galaxy.tool_util.deps.mulled',
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'galaxy.tool_util.deps.resolvers',
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'galaxy.tool_util.linters',
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'galaxy.tool_util.locations',
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'galaxy.tool_util.parser',
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'galaxy.tool_util.verify',
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'galaxy.tool_util.verify.asserts',
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]
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ENTRY_POINTS = '''
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[console_scripts]
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galaxy-tool-test=galaxy.tool_util.verify.script:main
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mulled-build=galaxy.tool_util.deps.mulled.mulled_build:main
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mulled-build-channel=galaxy.tool_util.deps.mulled.mulled_build_channel:main
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mulled-search=galaxy.tool_util.deps.mulled.mulled_search:main
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mulled-build-tool=galaxy.tool_util.deps.mulled.mulled_build_tool:main
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mulled-build-files=galaxy.tool_util.deps.mulled.mulled_build_files:main
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mulled-list=galaxy.tool_util.deps.mulled.mulled_list:main
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mulled-update-singularity-containers=galaxy.tool_util.deps.mulled.mulled_update_singularity_containers:main
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'''
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PACKAGE_DATA = {
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# Be sure to update MANIFEST.in for source dist.
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'galaxy': [
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'tool_util/deps/mulled/invfile.lua',
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'tool_util/deps/resolvers/default_conda_mapping.yml',
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'tool_util/xsd/galaxy.xsd',
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],
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}
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PACKAGE_DIR = {
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SOURCE_DIR: SOURCE_DIR,
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}
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readme = open('README.rst').read()
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history = open('HISTORY.rst').read().replace('.. :changelog:', '')
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if os.path.exists("requirements.txt"):
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requirements = open("requirements.txt").read().split("\n")
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else:
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# In tox, it will cover them anyway.
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requirements = []
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test_requirements = open("test-requirements.txt").read().split("\n")
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setup(
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name=PROJECT_NAME,
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version=version,
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description=PROJECT_DESCRIPTION,
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long_description=readme + '\n\n' + history,
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long_description_content_type='text/x-rst',
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author=PROJECT_AUTHOR,
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author_email=PROJECT_EMAIL,
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url=PROJECT_URL,
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packages=PACKAGES,
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entry_points=ENTRY_POINTS,
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package_data=PACKAGE_DATA,
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package_dir=PACKAGE_DIR,
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include_package_data=True,
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install_requires=requirements,
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extras_require={
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'mulled': [
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'conda',
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'cytoolz', # cytoolz is an undeclared dependency of the conda package on PyPI
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'jinja2',
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'Whoosh',
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],
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},
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license="AFL",
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zip_safe=False,
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keywords='galaxy',
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classifiers=[
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'Development Status :: 5 - Production/Stable',
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'Intended Audience :: Developers',
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'Environment :: Console',
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'License :: OSI Approved :: Academic Free License (AFL)',
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'Operating System :: POSIX',
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'Topic :: Software Development',
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'Topic :: Software Development :: Code Generators',
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'Topic :: Software Development :: Testing',
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'Natural Language :: English',
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"Programming Language :: Python :: 3",
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'Programming Language :: Python :: 3.6',
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'Programming Language :: Python :: 3.7',
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'Programming Language :: Python :: 3.8',
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'Programming Language :: Python :: 3.9',
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],
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test_suite=TEST_DIR,
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tests_require=test_requirements
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)
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