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Was deprecated in SQLAlchemy 1.3, removed in SQLAlchemy 1.4 https://docs.sqlalchemy.org/en/14/changelog/changelog_14.html#change-3687655465c25a39b968b4f5f6e9170b https://github.com/sqlalchemy/sqlalchemy/issues/4643
77 lines
2.6 KiB
YAML
77 lines
2.6 KiB
YAML
name: Integration
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on: [push, pull_request]
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env:
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GALAXY_TEST_DBURI: 'postgresql://postgres:postgres@localhost:5432/galaxy?client_encoding=utf8'
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GALAXY_TEST_AMQP_URL: 'amqp://localhost:5672//'
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jobs:
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test:
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name: Test
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runs-on: ubuntu-latest
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strategy:
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fail-fast: false
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matrix:
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python-version: ['3.7']
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subset: ['upload_datatype', 'extended_metadata', 'kubernetes', 'not (upload_datatype or extended_metadata or kubernetes)']
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services:
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postgres:
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image: postgres:13
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env:
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POSTGRES_USER: postgres
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POSTGRES_PASSWORD: postgres
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POSTGRES_DB: postgres
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ports:
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- 5432:5432
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rabbitmq:
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image: rabbitmq
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ports:
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- 5672:5672
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steps:
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- name: Prune unused docker image, volumes and containers
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run: docker system prune -a -f
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- name: Clean dotnet folder for space
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if: matrix.subset == 'kubernetes'
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run: rm -Rf /usr/share/dotnet
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- name: Setup Minikube
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if: matrix.subset == 'kubernetes'
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id: minikube
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uses: CodingNagger/minikube-setup-action@v1.0.3
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with:
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minikube-version: "1.9.0-0_amd64"
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- name: Launch Minikube
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if: matrix.subset == 'kubernetes'
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run: eval ${{ steps.minikube.outputs.launcher }}
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- name: Check pods
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if: matrix.subset == 'kubernetes'
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run: |
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kubectl get pods
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- uses: actions/checkout@v2
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with:
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path: 'galaxy root'
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- uses: actions/setup-python@v1
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with:
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python-version: ${{ matrix.python-version }}
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- name: Cache pip dir
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uses: actions/cache@v1
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id: pip-cache
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with:
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path: ~/.cache/pip
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key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
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- name: Install ffmpeg
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run: sudo apt-get update && sudo apt-get -y install ffmpeg
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if: matrix.subset == 'upload_datatype'
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- name: Run tests
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if: matrix.subset != 'kubernetes'
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run: './run_tests.sh -integration test/integration -- -k "${{ matrix.subset }}"'
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working-directory: 'galaxy root'
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- name: Run tests
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if: matrix.subset == 'kubernetes'
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run: |
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. .ci/minikube-test-setup/start_services.sh
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./run_tests.sh -integration test/integration -- -k "${{ matrix.subset }}"
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working-directory: 'galaxy root'
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- uses: actions/upload-artifact@v2
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if: failure()
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with:
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name: Integration test results (${{ matrix.python-version }}, ${{ matrix.subset }})
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path: 'galaxy root/run_integration_tests.html'
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