mirror of
https://github.com/galaxyproject/galaxy.git
synced 2026-09-21 13:50:20 +08:00
Daniel Blankenberg
310911f861
GMAJ can now export MAF blocks back into the user's history. The Interface for defining annotations has been updated.
24 lines
624 B
Python
24 lines
624 B
Python
#!/usr/bin/env python
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"""
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Script that Creates a zip file for use by GMAJ
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"""
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import sys, zipfile
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def __main__():
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#create a new zip file
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out_file = zipfile.ZipFile( sys.argv[1], "w" )
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#add info files
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out_file.write( sys.argv[3], "input.gmaj" ) #THIS FILE MUST BE ADDED FIRST
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out_file.write( sys.argv[2], "input.maf" )
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#add annotation files
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for line in open( sys.argv[4] ):
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try:
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out_file.write( *[ field.strip() for field in line.split( "=", 1 ) ] )
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except:
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continue
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out_file.close()
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if __name__ == "__main__": __main__()
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