Guruprasad Anada 3520ce3aec Updating security from central

2008-09-24 18:22:55 -04:00

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annotation_profiler

More fixes for twill 0.9, the annotation profiler tests do not yet pass, but all else should work now, more tests coming soon.

2008-09-05 16:36:51 -04:00

data_destination

1) Add a new <security_check> tag to DataToolParameters to filter out datasets from inclusion in the select list that do not pass the check. The tag set looks something like <security_check group="public" action="access"/>.

2008-09-23 17:23:29 -04:00

data_source

my message

2008-09-22 10:39:47 -04:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Completed an old FIXME in DefaultToolAction.execute() - metadata no longer added to "incoming". Tool config params changed from things like$input_chromCol to ${input.metadata.chromCol}.

2008-07-23 15:27:39 -04:00

extract

Fix for dataset_metadata_in_file validator: all locally cached data files that are columnar must have columns separated by tabs characters, not white space. I've eliminated the 'split' param from the validator as it was causing problems. Extract genomic DNA tool should now finally work correctly.

2008-08-22 11:22:44 -04:00

fasta_tools

Bug fix for Concatenate FASTA alignment by species tool.

2008-07-29 11:24:28 -04:00

filters

Rewrote "Compare two queries" tool in Python.

2008-09-16 14:09:16 -04:00

hyphy

Revert 2715.

2008-06-04 13:02:15 +00:00

maf

Updating security from central

2008-09-17 17:25:17 -04:00

metag_tools

Fix a bug in shrimp_wrapper and add a tool for splitting paired-end reads.

2008-09-19 12:02:13 -04:00

new_operations

More fixes for twill 0.9, the annotation profiler tests do not yet pass, but all else should work now, more tests coming soon.

2008-09-05 16:36:51 -04:00

plotting

Fix for scatterplot.py: Handling an uncaught exception.

2008-09-08 14:36:37 -04:00

regVariation

Adding tools to fetch microsatellites and estimate their mutabilities.

2008-09-24 18:20:39 -04:00

sr_mapping

Typos

2008-09-12 15:35:50 -04:00

stats

my message

2008-09-24 11:17:21 -04:00

taxonomy

typo

2008-07-07 15:17:32 +00:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

Update GMAJ tool interface.

2008-09-19 12:27:20 -04:00