mvdbeek 350508909d Fix more tests ...

Include a perl dependency and profile version for the `addValue` tool.
It otherwise fails on OSX with
```
INFO     galaxy.tool_util.output_checker:output_checker.py:155 Job failed because of contents in the standard error stream: [perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
	LC_ALL = (unset),
	LC_CTYPE = "C.UTF-8",
	LANG = (unset)
    are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
]
```

Also fix CollectionTypeDescription when collection_type is already CollectionTypeDescription
and fix some wrong type annotations in lib/galaxy/tools/actions/__init__.py

Into more fixes

2022-11-09 15:35:31 +01:00

..

galaxy

Fix more tests

2022-11-09 15:35:31 +01:00

galaxy_ext

Fix isort complaint

2022-09-21 19:01:05 -04:00

galaxy_test

Drop old hack, we're extracting HDAs for DCEs just fine these days

2022-11-08 23:06:21 +01:00

tool_shed

Merge branch 'release_22.05' into dev

2022-11-07 23:12:32 +00:00

tool_shed_client

Use API repository object instead of database object in dozens of spots in tool shed functional tests.

2022-09-24 08:42:23 -04:00