Files
galaxy/tools/filters/catWrapper.py
T

38 lines
847 B
Python

#!/usr/bin/env python
#By, Guruprasad Ananda.
from galaxy import eggs
import sys, os
def stop_err(msg):
sys.stderr.write(msg)
sys.exit()
def main():
outfile = sys.argv[1]
infile = sys.argv[2]
try:
fout = open(sys.argv[1],'w')
except:
stop_err("Output file cannot be opened for writing.")
try:
fin = open(sys.argv[2],'r')
except:
stop_err("Input file cannot be opened for reading.")
if len(sys.argv) < 4:
os.system("cp %s %s" %(infile,outfile))
sys.exit()
cmdline = "cat %s " %(infile)
for inp in sys.argv[3:]:
cmdline = cmdline + inp + " "
cmdline = cmdline + ">" + outfile
try:
os.system(cmdline)
except:
stop_err("Error encountered with cat.")
if __name__ == "__main__": main()