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102 lines
4.9 KiB
Python
102 lines
4.9 KiB
Python
from galaxy.util import bunch
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from galaxy import model
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from galaxy.tools.parameters import basic
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from .test_parameter_parsing import BaseParameterTestCase
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class SelectToolParameterTestCase( BaseParameterTestCase ):
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def test_dep_dummy_datasets_need_late_validation( self ):
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self.options_xml = '''<options><filter type="data_meta" ref="input_bam" key="dbkey"/></options>'''
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assert self.param.need_late_validation( self.trans, { "input_bam": basic.DummyDataset() } )
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def test_dep_runtime_values_need_late_validation( self ):
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self.options_xml = '''<options><filter type="data_meta" ref="input_bam" key="dbkey"/></options>'''
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assert self.param.need_late_validation( self.trans, { "input_bam": basic.RuntimeValue() } )
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def test_dep_unvalidated_values_need_late_validation( self ):
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self.options_xml = '''<options><filter type="data_meta" ref="input_bam" key="dbkey"/></options>'''
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assert self.param.need_late_validation( self.trans, { "input_bam": basic.UnvalidatedValue( "42" ) } )
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def test_dep_real_datasets_no_late_validation( self ):
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self.options_xml = '''<options><filter type="data_meta" ref="input_bam" key="dbkey"/></options>'''
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assert not self.param.need_late_validation( self.trans, { "input_bam": model.HistoryDatasetAssociation() } )
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def test_nested_context_validation_needed( self ):
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self.options_xml = '''<options><filter type="data_meta" ref="input_bam" key="dbkey"/></options>'''
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# Data ref currently must be same level, if not at top level.
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assert self.param.need_late_validation( self.trans, { "reference_source": { "my_name": "42", "input_bam": basic.RuntimeValue() } } )
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def test_nested_context_validation_not_needed( self ):
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self.options_xml = '''<options><filter type="data_meta" ref="input_bam" key="dbkey"/></options>'''
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# Data ref currently must be same level, if not at top level.
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assert not self.param.need_late_validation( self.trans, { "reference_source": { "my_name": "42", "input_bam": model.HistoryDatasetAssociation() } } )
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def test_filter_param_value( self ):
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self.options_xml = '''<options from_data_table="test_table"><filter type="param_value" ref="input_bam" column="0" /></options>'''
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assert ("testname1", "testpath1", False) in self.param.get_options( self.trans, { "input_bam": "testname1" } )
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assert ("testname2", "testpath2", False) in self.param.get_options( self.trans, { "input_bam": "testname2" } )
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assert len( self.param.get_options( self.trans, { "input_bam": "testname3" } ) ) == 0
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def test_filter_param_value2( self ):
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# Same test as above, but filtering on a different column.
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self.options_xml = '''<options from_data_table="test_table"><filter type="param_value" ref="input_bam" column="1" /></options>'''
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assert ("testname1", "testpath1", False) in self.param.get_options( self.trans, { "input_bam": "testpath1" } )
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assert ("testname2", "testpath2", False) in self.param.get_options( self.trans, { "input_bam": "testpath2" } )
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assert len( self.param.get_options( self.trans, { "input_bam": "testpath3" } ) ) == 0
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# TODO: Good deal of overlap here with DataToolParameterTestCase,
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# refactor.
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def setUp( self ):
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super(SelectToolParameterTestCase, self).setUp()
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self.test_history = model.History()
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self.app.model.context.add( self.test_history )
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self.app.model.context.flush()
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self.app.tool_data_tables[ "test_table" ] = MockToolDataTable()
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self.trans = bunch.Bunch(
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app=self.app,
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get_history=lambda: self.test_history,
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get_current_user_roles=lambda: [],
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workflow_building_mode=False,
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webapp=bunch.Bunch( name="galaxy" ),
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)
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self.type = "select"
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self.set_data_ref = False
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self.multiple = False
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self.optional = False
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self.options_xml = ""
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self._param = None
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@property
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def param( self ):
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if not self._param:
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multi_text = ""
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if self.multiple:
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multi_text = 'multiple="True"'
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optional_text = ""
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if self.optional:
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optional_text = 'optional="True"'
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options_text = self.options_xml
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data_ref_text = ""
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if self.set_data_ref:
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data_ref_text = 'data_ref="input_bam"'
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template_xml = '''<param name="my_name" type="%s" %s %s %s>%s</param>'''
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param_str = template_xml % ( self.type, data_ref_text, multi_text, optional_text, options_text )
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self._param = self._parameter_for( xml=param_str )
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return self._param
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class MockToolDataTable( object ):
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def __init__( self ):
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self.columns = dict(
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name=0,
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value=1,
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)
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self.missing_index_file = None
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def get_fields( self ):
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return [ [ "testname1", "testpath1" ], [ "testname2", "testpath2" ] ]
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