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https://github.com/galaxyproject/galaxy.git
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John Chilton
e99adb5b0f
Runs tests in a Dockerfile with pre-migrated databases and all testing dependencies (postgres, mysql, npm, casper, phantomjs, etc...). Hopefully this makes it easier to run more interesting tests - down the road I would like to add more options for things like condor, slurm, run as real user, etc....
39 lines
1.0 KiB
Bash
39 lines
1.0 KiB
Bash
#!/bin/bash
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set -e
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MYSQL_USER=galaxy
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MYSQL_PASSWORD=galaxy
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MYSQL_DATABASE=galaxy
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mkdir -p /var/lib/mysql
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chown -R mysql:mysql /var/lib/mysql
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# Derived from
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# https://github.com/docker-library/mysql/blob/master/5.7/docker-entrypoint.sh
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DATADIR="$(mysqld --verbose --help 2>/dev/null | awk '$1 == "datadir" { print $2; exit }')"
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tempSqlFile='/tmp/mysql-first-time.sql'
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cat > "$tempSqlFile" <<-EOSQL
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DELETE FROM mysql.user ;
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CREATE USER 'root'@'%' IDENTIFIED BY '${MYSQL_ROOT_PASSWORD}' ;
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GRANT ALL ON *.* TO 'root'@'%' WITH GRANT OPTION ;
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DROP DATABASE IF EXISTS test ;
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EOSQL
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if [ "$MYSQL_DATABASE" ]; then
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echo "CREATE DATABASE IF NOT EXISTS \`$MYSQL_DATABASE\` ;" >> "$tempSqlFile"
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fi
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if [ "$MYSQL_USER" -a "$MYSQL_PASSWORD" ]; then
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echo "CREATE USER '$MYSQL_USER'@'%' IDENTIFIED BY '$MYSQL_PASSWORD' ;" >> "$tempSqlFile"
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if [ "$MYSQL_DATABASE" ]; then
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echo "GRANT ALL ON \`$MYSQL_DATABASE\`.* TO '$MYSQL_USER'@'%' ;" >> "$tempSqlFile"
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fi
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fi
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echo 'FLUSH PRIVILEGES ;' >> "$tempSqlFile"
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mysqld_safe --init-file="$tempSqlFile" &
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sleep 5 |