Daniel Blankenberg 86f66bc1c4 Allow External display applications to use Tool Data Tables. ...

Have IGV external display application load a set of links for available genomes via a tool data table that reads a URL (http://igv.broadinstitute.org/genomes/genomes.txt). The manually specified builds links should now be used to add additional builds, or for alias mapping (e.g. hg_g1k_v37-->b37).

Merge branch 'release_15.03' into dev

2015-02-27 15:53:58 -05:00

..

capsule

Encapsulate the Tool Shed's metadata generator.

2014-09-04 13:14:00 -04:00

dependencies

Add a UtilityContainerManager class and subclasses for displaying Tool Shed utility containers.

2014-07-31 15:27:21 -04:00

galaxy_install

Allow External display applications to use Tool Data Tables.

2015-02-27 15:53:58 -05:00

grids

First pass removing to_json_string/from_json_string.

2014-09-08 16:41:53 -04:00

metadata

When resetting repository metadata in the toolshed, don't overwrite the already set relative_install_dir.

2015-02-11 17:36:05 -05:00

repository_types

Continued down-sizing of the Tool Shed's shed_util_common module by moving certain functions to more appropriate locations. Some fixes for adding and removing entries to the Tool Shed's repository registry.

2014-05-28 11:17:50 -04:00

scripts

PEP-8 fixes for install_and_test scripts.

2015-01-14 21:03:12 -05:00

tools

Fix for installing .loc files from the toolshed to respect shed_tool_data_path. Mention shed_tool_data_path in galaxy.ini.sample.

2015-02-24 12:02:42 -05:00

util

Merge pull request #2 from martenson/ts-api-create-repo

2015-02-24 20:24:08 -05:00

utility_containers

Add a UtilityContainerManager class and subclasses for displaying Tool Shed utility containers.

2014-07-31 15:27:21 -04:00

__init__.py

Move ~/lib/galaxy/tool_shed to ~/lib/tool_shed, and move the ~/lib/galaxy/util/shed_util componets to ~/lib/tool_shed/util.

2013-02-26 15:52:51 -05:00

repository_registry.py

Pes-8 fixes for the Tool Shed's repository_registry module.

2014-06-03 15:19:54 -04:00

tool_shed_registry.py

Handle changing http protocols in the tool shed registry's password_manager_for_url() function.

2014-04-28 15:58:48 -04:00