Dave Bouvier 917d5a72e8 Migrated lastz and bowtie tools to the tool shed. Added a target_file feature to the tool dependency installation process.

2012-11-26 10:18:47 -05:00

..

bfast_wrapper.py

Sam header suppression made optional in BFAST and default set to off for BFAST and Bowtie. Fixed dbkey setting on outputs for for BFAST, Bowtie, Mosaik. Fixed sorting of built-in builds for these tools so ordered by pretty name.

2011-05-09 12:11:54 -04:00

bfast_wrapper.xml

Sam header suppression made optional in BFAST and default set to off for BFAST and Bowtie. Fixed dbkey setting on outputs for for BFAST, Bowtie, Mosaik. Fixed sorting of built-in builds for these tools so ordered by pretty name.

2011-05-09 12:11:54 -04:00

bowtie2_wrapper.py

Output sorted BAM from Bowtie2.

2012-08-22 16:49:12 -04:00

bowtie2_wrapper.xml

Have Bowtie2 wrapper produce BAM rather than SAM output.

2012-06-11 15:52:36 -04:00

fastq_statistics.xml

fix some typos for tools in folders N-Z

2009-09-25 02:06:03 -04:00

mosaik.xml

Replace old filter() on tool_data_tables by param value hack with param.fields.path for several tools.

2011-11-29 17:30:14 -05:00

PerM.xml

Minor fix for 04e8ed0cd930.

2011-11-29 17:35:14 -05:00

srma_wrapper.py

Update SRMA wrapper to use data tables.

2011-10-31 09:49:51 -04:00

srma_wrapper.xml

Update SRMA wrapper to use data tables.

2011-10-31 09:49:51 -04:00