Daniel Blankenberg 310911f861 Update GMAJ to the latest beta. ...

GMAJ can now export MAF blocks back into the user's history.

The Interface for defining annotations has been updated.

2008-05-16 18:39:41 +00:00

..

annotation_profiler

Adding a new parameter type drill_down. This parameter type creates a hierarchical set of checkboxes or radiobuttons.

2008-05-07 17:10:35 +00:00

data_source

Changed URL for communicating with elegans server.

2008-05-16 12:15:04 +00:00

emboss_5

Forgot to eliminate the emboss path...

2008-04-25 19:07:26 +00:00

encode

Misc tool cleanup: eliminated all references to python2.3 / python2.4, imported galaxy eggs in several missed tools. Commented Pattern Matching tool section from tool_conf.xml.sample since tool is not functional. Added job runner info for short read tools in universe_wsgi.ini.sample.

2008-04-25 13:04:55 +00:00

extract

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

fasta_tools

Moving tool description in config files to 'name' attribute so it is shown in histrory. New test for fasta tools and one typo fix.

2008-05-01 14:24:44 +00:00

filters

More changes plus modification requested by Madelaine Gogol

2008-04-28 16:08:30 +00:00

hyphy

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

maf

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

metag_tools

Silencing megablast

2008-05-01 15:06:53 +00:00

new_operations

Added another wrapper around bx to handle exceptions, all gops tools affected. Added 2 new tests to gops_intersect.

2008-05-07 14:07:23 +00:00

plotting

Added tool dependencies to xml.

2008-04-25 19:40:16 +00:00

regVariation

Modified "feature coverage" tool under regional variation using intervaltree and coverage from bx.

2008-05-11 18:55:35 +00:00

stats

Improved information in filtering tool.

2008-05-15 12:38:30 +00:00

taxonomy

Fixes for interface element names

2008-05-07 00:39:41 +00:00

validation

Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.

2008-03-28 15:24:50 +00:00

visualization

Update GMAJ to the latest beta.

2008-05-16 18:39:41 +00:00