John Chilton 4f223913e8 Temporary config option to isolate tool commands in their own shell. ...

Like done for Docker to isolate metadata commands from the environment modifications required to resolve tool dependencies. Should allow for Python 3 dependencies (originally also allowed samtools - but Nate other commit resolved that problem also).

Just meant as a config option for now - it will become the default once tested more thoroughly. For now enable it by setting enable_beta_tool_command_isolation to True in galaxy.ini.

2015-02-02 09:27:19 -05:00

..

test_rules

Dynamic destinations - allow dispatching on workflow invocation.

2014-08-17 18:43:54 -04:00

__init__.py

Rework interface between jobs and tools.

2014-02-10 21:34:42 -06:00

test_command_factory.py

Temporary config option to isolate tool commands in their own shell.

2015-02-02 09:27:19 -05:00

test_datasets.py

Refactor DatasetPath out into newer galaxy.jobs.datasets module.

2014-02-10 21:34:42 -06:00

test_job_configuration.py

Fix unit tests I broke.

2014-09-16 10:13:08 -04:00

test_job_output_checker.py

More stdio handling tests.

2014-05-21 11:11:39 -05:00

test_job_wrapper.py

Allow multiple tools with the same id in ToolBox.

2014-12-31 18:21:10 -05:00

test_mapper.py

Fix unit tests broken with 9f63d96.

2014-09-03 08:43:25 -04:00

test_rule_helper.py

Dynamic destinations - easier, high-level reasoning about bursting.

2014-08-17 18:43:54 -04:00

test_runner_local.py

Temporary config option to isolate tool commands in their own shell.

2015-02-02 09:27:19 -05:00

test_runner_params.py

Unit tests for RunnerParams.

2014-05-29 00:15:38 -05:00