John Chilton 6000f79b6d Fix extra newlines in peek code. ...

Behavior changes:
 - Now includes a trailing new line if the input contained a trailing newline.
 - Now returns only as many lines as are present if the file contains fewer lines than LINE_COUNT.

2019-05-17 15:41:13 -04:00

..

chained_dyndest_rules

Added integration test for rules_module overrides

2018-11-16 12:27:32 +05:30

delay_rules

Integration test for job recovery (before and after handler has picked it up).

2018-08-21 15:17:12 -04:00

objectstore_selection_rules

Allow configuring object stores on a per-job-destination basis.

2018-08-06 11:29:08 -04:00

resubmission_rules

Test resubmit for completely dynamic JobDestination structures.

2017-12-06 10:25:29 -05:00

__init__.py

Fix things found by @mvdbeek

2016-04-05 14:59:09 -04:00

chained_dyndest_job_conf.xml

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

delay_job_conf.xml

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

dockerized_job_conf.xml

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

embedded_pulsar_job_conf.xml

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

embedded_pulsar_metadata_job_conf.xml

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

handler_template_job_conf.xml

Integration tests for handler assignment methods

2019-01-04 16:46:29 -05:00

io_injection_job_conf.xml

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

objectstore_selection_job_conf.xml

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

objectstore_selection_job_resource_parameters_conf.xml

Allow configuring object stores on a per-job-destination basis.

2018-08-06 11:29:08 -04:00

resubmission_default_job_conf.xml

Implement a Galaxy config option for default job re-submission conditions.

2017-01-04 16:11:56 -05:00

resubmission_dynamic_job_conf.xml

Test resubmit for completely dynamic JobDestination structures.

2017-12-06 10:25:29 -05:00

resubmission_job_conf.xml

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

resubmission_job_resource_parameters_conf.xml

Add seconds_running and seconds_since_queued to condition expression langauge.

2016-12-14 13:41:29 -05:00

resubmission_pulsar_job_conf.xml

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

resubmission_runners.py

Implement a Galaxy config option for default job re-submission conditions.

2017-01-04 16:11:56 -05:00

resubmission_small_memory_job_conf.xml

Tool-centric annotation of out of memory errors.

2017-12-22 09:08:18 -05:00

resubmission_small_memory_resubmission_to_large_job_conf.xml

Tool-centric annotation of out of memory errors.

2017-12-22 09:08:18 -05:00

resubmission_tool_detected_always_error_job_conf.xml

Fix resubmission on tool error detection.

2018-11-23 14:32:04 +01:00

resubmission_tool_detected_resubmit_job_conf.xml

Fix resubmission on tool error detection.

2018-11-23 14:32:04 +01:00

sets_tmp_dir_expression_job_conf.xml

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

sets_tmp_dir_to_true_job_conf.xml

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

simple_job_conf.xml

Fix failing integration test.

2019-05-03 08:38:33 -04:00

singularity_job_conf.xml

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

test_chained_dynamic_destinations.py

Update test/integration/test_chained_dynamic_destinations.py

2018-11-16 17:12:45 +05:30

test_cli_runners.py

Share ssh key generation across tests

2018-10-14 18:08:17 +02:00

test_config_options_users.py

Tweak exposing user attributes to use an include list instead of exclude list.

2017-07-05 07:04:20 -04:00

test_containerized_jobs.py

Don't use skip_unless_docker decorator

2019-03-02 12:19:14 +01:00

test_data_manager_table_reload.py

py3: fix installing and running data managers

2018-08-14 14:56:06 +02:00

test_datatype_upload.py

Fix extra newlines in peek code.

2019-05-17 15:41:13 -04:00

test_handler_assignment_methods.py

Integration tests for handler assignment methods

2019-01-04 16:46:29 -05:00

test_job_environments.py

Seperate tool and job script standard I/O.

2019-03-04 15:39:07 -05:00

test_job_recovery.py

Test cancelling jobs, running mulled containers on kubernetes

2019-02-19 13:22:10 +01:00

test_job_resubmission.py

Added test for pulsar resubmission

2018-11-28 22:41:38 +05:30

test_kubernetes_runner.py

Fix kubernetes integration tests for Docker on Mac.

2019-04-16 08:28:36 -04:00

test_local_job_cancellation.py

Update to flake8-import-order 0.16

2017-12-01 11:09:57 +00:00

test_mules_as_job_handlers.py

Do test mules on Jenkins, I don't see why this shouldn't work

2018-08-14 14:56:07 +02:00

test_objectstore_jobs.py

Cleanup integration test configuration code.

2019-05-02 08:45:11 -04:00

test_objectstore_selection.py

Allow configuring object stores on a per-job-destination basis.

2018-08-06 11:29:08 -04:00

test_pulsar_embedded_metadata.py

Fix pulsar with metadata_strategy == 'directory'.

2019-04-08 16:30:15 -04:00

test_pulsar_embedded.py

Refactor IntegrationTestCase to allow integration test functions.

2019-04-04 14:58:55 -04:00

test_resolvers.py

Add integration test for un/install with resolver_type

2019-01-06 15:01:31 +01:00

test_scripts.py

Integration tests for handler assignment methods

2019-01-04 16:46:29 -05:00

test_shed_tool_tests.py

Integration test case for running tool tests against shed installed tools.

2018-03-06 20:07:52 -05:00

test_upload_configuration_options.py

Refactor IntegrationTestCase to allow integration test functions.

2019-04-04 14:58:55 -04:00

test_workflow_handler_configuration.py

Update to flake8-import-order 0.16

2017-12-01 11:09:57 +00:00

test_workflow_scheduling_options.py

Update to flake8-import-order 0.16

2017-12-01 11:09:57 +00:00

test_workflow_sync.py

Use `yaml.safe_load() instead of load()`

2019-04-23 16:50:55 +01:00

tool_sheds_conf.xml

py3: fix installing and running data managers

2018-08-14 14:56:06 +02:00

uses_shed.py

Allow setting CONDA_PREFIX using GALAXY_TEST_CONDA_PREFIX in testing

2018-08-23 14:57:31 +02:00

workflow_handler_configuration_job_conf.xml

[17.01] Restrict workflow scheduling within a history to a fixed, random handler.

2017-03-29 22:20:41 -04:00

workflow_handler_configuration_workflow_scheduler_conf.xml

Allow explicit workflow scheduler handler process configuration.

2017-04-07 16:20:03 -04:00